Simon D. W. Frost

Publication Activity (10 Years)

Years Active: 2005-2019
Publications (10 Years): 3

Top Topics

Stochastic Simulation

Phylogenetic Trees

Categorical Data

Top Venues

PLoS Comput. Biol.

J. Open Source Softw.

Publications

Fei Xiang, Bethany L. Dearlove, Simon D. W. Frost
genieR: An R package for inference of demographic history of phylogenies. J. Open Source Softw. 4 (33) (2019)
Simon D. W. Frost
Gillespie.jl: Stochastic Simulation Algorithm in Julia. J. Open Source Softw. 1 (3) (2016)
Bethany L. Dearlove, Simon D. W. Frost
Measuring Asymmetry in Time-Stamped Phylogenies. PLoS Comput. Biol. 11 (7) (2015)
Erik M. Volz, Simon D. W. Frost
Inferring the Source of Transmission with Phylogenetic Data. PLoS Comput. Biol. 9 (12) (2013)
Erik M. Volz, James S. Koopman, Melissa J. Ward, Andrew J. Leigh Brown, Simon D. W. Frost
Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection. PLoS Comput. Biol. 8 (6) (2012)
Wayne Delport, Art F. Y. Poon, Simon D. W. Frost, Sergei L. Kosakovsky Pond
Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinform. 26 (19) (2010)
Sergei L. Kosakovsky Pond, David Posada, Eric Stawiski, Colombe Chappey, Art F. Y. Poon, Gareth Hughes, Esther Fearnhill, Mike B. Gravenor, Andrew J. Leigh Brown, Simon D. W. Frost
An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1. PLoS Comput. Biol. 5 (11) (2009)
Art F. Y. Poon, Fraser I. Lewis, Simon D. W. Frost, Sergei L. Kosakovsky Pond
Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models. Bioinform. 24 (17) (2008)
Art F. Y. Poon, Fraser I. Lewis, Sergei L. Kosakovsky Pond, Simon D. W. Frost
An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope. PLoS Comput. Biol. 3 (11) (2007)
Art F. Y. Poon, Fraser I. Lewis, Sergei L. Kosakovsky Pond, Simon D. W. Frost
Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope. PLoS Comput. Biol. 3 (1) (2007)
Sergei L. Kosakovsky Pond, Simon D. W. Frost, Zehava Grossman, Michael B. Gravenor, Douglas D. Richman, Andrew J. Leigh Brown
Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses. PLoS Comput. Biol. 2 (6) (2006)
Sergei L. Kosakovsky Pond, David Posada, Michael B. Gravenor, Christopher H. Woelk, Simon D. W. Frost
GARD: a genetic algorithm for recombination detection. Bioinform. 22 (24) (2006)
Sergei L. Kosakovsky Pond, Simon D. W. Frost
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinform. 21 (10) (2005)
Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse
HyPhy: hypothesis testing using phylogenies. Bioinform. 21 (5) (2005)