Lars Arvestad

Publication Activity (10 Years)

Years Active: 1997-2018
Publications (10 Years): 7

Top Topics

Markov Chain Monte Carlo

Probabilistic Inference

Top Venues

J. Comput. Biol.

Publications

Lars Arvestad
alv: a console-based viewer for molecular sequence alignments. J. Open Source Softw. 3 (31) (2018)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias. J. Comput. Biol. 24 (6) (2017)
Raja Ali, Mikael Bark, Jorge Miró, Sayyed Muhammad, Joel Sjöstrand, Syed M. Zubair, Raja M. Abbas, Lars Arvestad
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces. BMC Bioinform. 18 (1) (2017)
Kristoffer Sahlin, Rayan Chikhi, Lars Arvestad
Assembly scaffolding with PE-contaminated mate-pair libraries. Bioinform. 32 (13) (2016)
Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad
Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias. RECOMB (2016)
Mehmood Alam Khan, Owais Mahmudi, Ikram Ullah, Lars Arvestad, Jens Lagergren
Probabilistic inference of lateral gene transfer events. BMC Bioinform. 17 (S-14) (2016)
Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti
Hierarchical Assembly of Pools. IWBBIO (2) (2015)
Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad
BESST - Efficient scaffolding of large fragmented assemblies. BMC Bioinform. 15 (2014)
Joel Sjöstrand, Lars Arvestad, Jens Lagergren, Bengt Sennblad
GenPhyloData: realistic simulation of gene family evolution. BMC Bioinform. 14 (2013)
Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti
GAM-NGS: genomic assemblies merger for next generation sequencing. BMC Bioinform. 14 (S-7) (2013)
Mehmood Alam Khan, Isaac Elias, Erik Sjölund, Kristina Nylander, Roman Valls Guimera, Richard Schobesberger, Peter Schmitzberger, Jens Lagergren, Lars Arvestad
fastphylo: Fast tools for phylogenetics. BMC Bioinform. 14 (2013)
Raja Ali, Sayyed Muhammad, Mehmood Alam Khan, Lars Arvestad
Quantitative synteny scoring improves homology inference and partitioning of gene families. BMC Bioinform. 14 (S-15) (2013)
Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad
Improved gap size estimation for scaffolding algorithms. Bioinform. 28 (17) (2012)
Joel Sjöstrand, Bengt Sennblad, Lars Arvestad, Jens Lagergren
DLRS: gene tree evolution in light of a species tree. Bioinform. 28 (22) (2012)
Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg
Classification of DNA sequences using Bloom filters. Bioinform. 26 (13) (2010)
Lars Arvestad, Jens Lagergren, Bengt Sennblad
The gene evolution model and computing its associated probabilities. J. ACM 56 (2) (2009)
Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad
primetv: a viewer for reconciled trees. BMC Bioinform. 8 (2007)
Örjan Svensson, Lars Arvestad, Jens Lagergren
Genome-Wide Survey for Biologically Functional Pseudogenes. PLoS Comput. Biol. 2 (5) (2006)
Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB (2004)
Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad
Bayesian gene/species tree reconciliation and orthology analysis using MCMC. ISMB (Supplement of Bioinformatics) (2003)
Lars Arvestad
Aligning Coding DNA in the Presence of Frame-Shift Errors. CPM (1997)