Joakim Lundeberg

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 7

Top Topics

Spatial Patterns

Processing Pipeline

Top Venues

Publications

Ludvig Bergenstråhle, Jens Lagergren, Joakim Lundeberg
Learning Stationary Markov Processes with Contrastive Adjustment. CoRR (2023)
Ludvig Larsson, Lovisa Franzén, Patrik L. Ståhl, Joakim Lundeberg
a versatile toolkit for spatially resolved transcriptomics analysis and visualization. Bioinform. 39 (10) (2023)
Alma Andersson, Joakim Lundeberg
sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling. Bioinform. 37 (17) (2021)
Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg
SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation. BMC Bioinform. 21 (1) (2020)
José Fernández Navarro, Joakim Lundeberg, Patrik L. Ståhl
ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets. Bioinform. 35 (6) (2019)
Kim Wong, José Fernández Navarro, Ludvig Bergenstråhle, Patrik L. Ståhl, Joakim Lundeberg
ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets. Bioinform. 34 (11) (2018)
José Fernández Navarro, Joel Sjöstrand, Fredrik Salmén, Joakim Lundeberg, Patrik L. Ståhl
ST Pipeline: an automated pipeline for spatial mapping of unique transcripts. Bioinform. 33 (16) (2017)
Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad
BESST - Efficient scaffolding of large fragmented assemblies. BMC Bioinform. 15 (2014)
Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad
Improved gap size estimation for scaffolding algorithms. Bioinform. 28 (17) (2012)
Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg
Classification of DNA sequences using Bloom filters. Bioinform. 26 (13) (2010)