Vincent Berry

Publication Activity (10 Years)

Years Active: 1993-2022
Publications (10 Years): 7

Top Topics

Computing Education

Top Venues

Publications

Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell
Stop Reinventing the Wheel! Promoting Community Software in Computing Education. ITiCSE-WGR (2022)
Vincent Berry, Arnaud Castelltort, Chrysta Pelissier, Marion Rousseau, Chouki Tibermacine
ShellOnYou: Learning by Doing Unix Command Line. ITiCSE (1) (2022)
Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell
Leveraging Community Software in CS Education to Avoid Reinventing the Wheel. ITiCSE (2) (2022)
Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. PLoS Comput. Biol. 17 (9) (2021)
Vincent Berry, Céline Scornavacca, Mathias Weller
Scanning Phylogenetic Networks Is NP-hard. SOFSEM (2020)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry
SylvX: a viewer for phylogenetic tree reconciliations. Bioinform. 32 (4) (2016)
Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry
Reconciliation and local gene tree rearrangement can be of mutual profit. Algorithms Mol. Biol. 8 (2013)
Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez
Representing a Set of Reconciliations in a Compact Way. J. Bioinform. Comput. Biol. 11 (2) (2013)
Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry
Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference. WABI (2012)
Philippe Gambette, Vincent Berry, Christophe Paul
Quartets and Unrooted phylogenetic Networks. J. Bioinform. Comput. Biol. 10 (4) (2012)
Céline Scornavacca, Vincent Berry, Vincent Ranwez
Building species trees from larger parts of phylogenomic databases. Inf. Comput. 209 (3) (2011)
Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry
Models, algorithms and programs for phylogeny reconciliation. Briefings Bioinform. 12 (5) (2011)
François Chevenet, Olivier Croce, Maxime Hebrard, Richard Christen, Vincent Berry
ScripTree: scripting phylogenetic graphics. Bioinform. 26 (8) (2010)
Sylvain Guillemot, Vincent Berry
Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (2) (2010)
Jean-Philippe Doyon, Céline Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. RECOMB-CG (2010)
Céline Scornavacca, Vincent Berry, Vincent Ranwez
From Gene Trees to Species Trees through a Supertree Approach. LATA (2009)
Vincent Berry, Christophe Paul, Sylvain Guillemot, François Nicolas
Linear time 3-approximation for the MAST problem. ACM Trans. Algorithms 5 (2) (2009)
Philippe Gambette, Vincent Berry, Christophe Paul
The Structure of Level-k Phylogenetic Networks. CPM (2009)
Sylvain Guillemot, François Nicolas, Vincent Berry, Christophe Paul
On the approximability of the Maximum Agreement SubTree and Maximum Compatible Tree problems. Discret. Appl. Math. 157 (7) (2009)
Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul
Computing galled networks from real data. Bioinform. 25 (12) (2009)
Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez
PhySIC_IST: cleaning source trees to infer more informative supertrees. BMC Bioinform. 9 (2008)
Sylvain Guillemot, Vincent Berry
Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem. CPM (2007)
Vincent Berry, François Nicolas
Maximum agreement and compatible supertrees. J. Discrete Algorithms 5 (3) (2007)
Vincent Berry, François Nicolas
Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (3) (2006)
Vincent Berry, Sylvain Guillemot, François Nicolas, Christophe Paul
On the Approximation of Computing Evolutionary Trees. COCOON (2005)
Vincent Berry, François Nicolas
Maximum Agreement and Compatible Supertrees (Extended Abstract). CPM (2004)
David Bryant, Vincent Berry
A Structured Family of Clustering and Tree Construction Methods. Adv. Appl. Math. 27 (4) (2001)
Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang
A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract). SODA (2000)
Vincent Berry, Olivier Gascuel
Inferring evolutionary trees with strong combinatorial evidence. Theor. Comput. Sci. 240 (2) (2000)
Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham
Quartet Cleaning: Improved Algorithms and Simulations. ESA (1999)
Vincent Berry, David Bryant
Faster reliable phylogenetic analysis. RECOMB (1999)
Vincent Berry, Olivier Gascuel
Inferring Evolutionary Trees with Strong Combinatorial Evidence. COCOON (1997)
Vincent Berry, Philippe Ézéquel
Évaluation répartie asynchrone de (certaines) requêtes DATALOG. JFPLC (1995)
Vincent Berry, Philippe Ézéquel
Distinguer les variables distinguées. JFPLC (1994)
Vincent Berry, Philippe Ézéquel
Generating Goals and Their Use In Recursive Query Processing. ILPS (1993)