Ming Li

ORCID

Publication Activity (10 Years)

Years Active: 1985-2024
Publications (10 Years): 24

Top Venues

CoRR

Nat. Mach. Intell.

J. Bioinform. Comput. Biol.

Bioinform.

Publications

Ziguang Li, Chao Huang, Xuliang Wang, Haibo Hu, Cole Wyeth, Dongbo Bu, Quan Yu, Wen Gao, Xingwu Liu, Ming Li
Understanding is Compression. CoRR (2024)
Zeping Mao, Ruixue Zhang, Lei Xin, Ming Li
Mitigating the missing-fragmentation problem in de novo peptide sequencing with a two-stage graph-based deep learning model. Nat. Mac. Intell. 5 (11) (2023)
Ngoc Hieu Tran, Jinbo Xu, Ming Li
A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction. Briefings Bioinform. 23 (1) (2022)
Jiasi Weng, Jian Weng, Gui Tang, Anjia Yang, Ming Li, Jia-Nan Liu
pvCNN: Privacy-Preserving and Verifiable Convolutional Neural Network Testing. CoRR (2022)
Mohan Zhang, Luchen Tan, Zihang Fu, Kun Xiong, Jimmy Lin, Ming Li, Zhengkai Tu
Don't Change Me! User-Controllable Selective Paraphrase Generation. EACL (2021)
He Bai, Peng Shi, Jimmy Lin, Yuqing Xie, Luchen Tan, Kun Xiong, Wen Gao, Ming Li
Segatron: Segment-Aware Transformer for Language Modeling and Understanding. AAAI (2021)
Rui Qiao, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices. Nat. Mach. Intell. 3 (5) (2021)
He Bai, Peng Shi, Jimmy Lin, Luchen Tan, Kun Xiong, Wen Gao, Jie Liu, Ming Li
Semantics of the Unwritten: The Effect of End of Paragraph and Sequence Tokens on Text Generation with GPT2. ACL (student) (2021)
Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li
ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (4) (2021)
Yuqing Xie, Wei Yang, Luchen Tan, Kun Xiong, Nicholas Jing Yuan, Baoxing Huai, Ming Li, Jimmy Lin
Distant Supervision for Multi-Stage Fine-Tuning in Retrieval-Based Question Answering. WWW (2020)
He Bai, Peng Shi, Jimmy Lin, Luchen Tan, Kun Xiong, Wen Gao, Ming Li
SegaBERT: Pre-training of Segment-aware BERT for Language Understanding. CoRR (2020)
He Bai, Peng Shi, Jimmy Lin, Luchen Tan, Kun Xiong, Wen Gao, Jie Liu, Ming Li
Semantics of the Unwritten. CoRR (2020)
Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. Nat. Mach. Intell. 2 (12) (2020)
Mohan Zhang, Luchen Tan, Zhengkai Tu, Zihang Fu, Kun Xiong, Ming Li, Jimmy Lin
To Paraphrase or Not To Paraphrase: User-Controllable Selective Paraphrase Generation. CoRR (2020)
Zhengkai Tu, Wei Yang, Zihang Fu, Yuqing Xie, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
Approximate Nearest Neighbor Search and Lightweight Dense Vector Reranking in Multi-Stage Retrieval Architectures. ICTIR (2020)
Wei Yang, Yuqing Xie, Aileen Lin, Xingyu Li, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
End-to-End Open-Domain Question Answering with BERTserini. CoRR (2019)
Ming Li
RNA Interaction. Genom. Proteom. Bioinform. 17 (5) (2019)
Wei Yang, Luchen Tan, Chunwei Lu, Anqi Cui, Han Li, Xi Chen, Kun Xiong, Muzi Wang, Ming Li, Jian Pei, Jimmy Lin
Detecting Customer Complaint Escalation with Recurrent Neural Networks and Manually-Engineered Features. NAACL-HLT (2) (2019)
Wei Yang, Yuqing Xie, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
Data Augmentation for BERT Fine-Tuning in Open-Domain Question Answering. CoRR (2019)
Wei Yang, Yuqing Xie, Aileen Lin, Xingyu Li, Luchen Tan, Kun Xiong, Ming Li, Jimmy Lin
End-to-End Open-Domain Question Answering with BERTserini. NAACL-HLT (Demonstrations) (2019)
Ming Li
Challenges from Cancer Immunotherapy. COCOON (2018)
Chunyi Yue, Hanqiang Cao, Kun Xiong, Anqi Cui, Haocheng Qin, Ming Li
Enhanced question understanding with dynamic memory networks for textual question answering. Expert Syst. Appl. 80 (2017)
Anqi Cui, Guangyu Feng, Borui Ye, Kun Xiong, Xing Yi Liu, Ming Li
UWNLP at the NTCIR-12 Short Text Conversation Task. NTCIR (2016)
Kun Xiong, Anqi Cui, Zefeng Zhang, Ming Li
Neural Contextual Conversation Learning with Labeled Question-Answering Pairs. CoRR (2016)
Guangyu Feng, Kun Xiong, Yang Tang, Anqi Cui, Jing Bai, Hang Li, Qiang Yang, Ming Li
Question Classification by Approximating Semantics. WWW (Companion Volume) (2015)
Ming Li, Limsoon Wong
John Wooley and JBCB. J. Bioinform. Comput. Biol. 13 (4) (2015)
Xianglilan Zhang, Zhigang Luo, Ming Li
Merge-Weighted Dynamic Time Warping for Speech Recognition. J. Comput. Sci. Technol. 29 (6) (2014)
John C. Wooley, Ming Li, Limsoon Wong
JBCB, the first decade. J. Bioinform. Comput. Biol. 12 (3) (2014)
Xuefeng Cui, Shuai Cheng Li, Lin He, Ming Li
Fingerprinting protein structures effectively and efficiently. Bioinform. 30 (7) (2014)
Chong Long, Jie Zhang, Minlie Huang, Xiaoyan Zhu, Ming Li, Bin Ma
Estimating feature ratings through an effective review selection approach. Knowl. Inf. Syst. 38 (2) (2014)
Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li
Determining Protein Structures from NOESY Distance Constraints by Semidefinite Programming. J. Comput. Biol. 20 (4) (2013)
Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi, Ming Li
Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles? Algorithms Mol. Biol. 8 (2013)
Yang Tang, Di Wang, Jing Bai, Xiaoyan Zhu, Ming Li
Information distance between what I said and what it heard. Commun. ACM 56 (7) (2013)
Daniel Holtby, Shuai Cheng Li, Ming Li
LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins. J. Comput. Biol. 20 (3) (2013)
Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Ming Li
Towards Reliable Automatic Protein Structure Alignment. WABI (2013)
Xianglilan Zhang, Hongnan Wang, Tony J. Collins, Zhigang Luo, Ming Li
Classifying Stem Cell Differentiation Images by Information Distance. ECML/PKDD (1) (2012)
Ming Li
(2) Protein structure determination on demand. BIBM (2012)
Shuai Cheng Li, Dongbo Bu, Ming Li
Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (1) (2012)
Daniel Holtby, Shuai Cheng Li, Ming Li
LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins. RECOMB (2012)
Xuefeng Cui, Shuai Cheng Li, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li
How Accurately Can We Model Protein Structures with Dihedral Angles? WABI (2012)
Shuai Cheng Li, Dongbo Bu, Ming Li
Clustering 100, 000 Protein Structure Decoys in Minutes. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li
Protein Structure by Semidefinite Facial Reduction. RECOMB (2012)
Richard Jang, Xin Gao, Ming Li
N-NOESY. BMC Bioinform. 13 (S-3) (2012)
Babak Alipanahi, Xin Gao, Emre Karakoç, Shuai Cheng Li, Frank J. Balbach, Guangyu Feng, Logan Donaldson, Ming Li
Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. J. Bioinform. Comput. Biol. 9 (1) (2011)
Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li
Finding Nearly Optimal GDT Scores. J. Comput. Biol. 18 (5) (2011)
Ming Li
Information Distance and Its Extensions. Discovery Science (2011)
Ming Li
Partial Match Distance - In Memoriam Ray Solomonoff 1926-2009. Algorithmic Probability and Friends (2011)
Ming Li
Information Distance and Its Extensions. ALT (2011)
Richard Jang, Xin Gao, Ming Li
N-Labeled Proteins From Automatically Picked Peaks. J. Comput. Biol. 18 (3) (2011)
Richard Jang, Xin Gao, Ming Li
N-NOESY. BCB (2011)
Fan Bu, Xiaoyan Zhu, Ming Li
A New Multiword Expression Metric and Its Applications. J. Comput. Sci. Technol. 26 (1) (2011)
Richard Jang, Xin Gao, Ming Li
Towards Automated Structure-Based NMR Resonance Assignment. RECOMB (2010)
Chong Long, Minlie Huang, Xiaoyan Zhu, Ming Li
A New Approach for Multi-Document Update Summarization. J. Comput. Sci. Technol. 25 (4) (2010)
Fan Bu, Xiaoyan Zhu, Ming Li
Measuring the Non-compositionality of Multiword Expressions. COLING (2010)
Yuzhong Zhao, Babak Alipanahi, Shuai Cheng Li, Ming Li
Protein Secondary Structure Prediction Using NMR Chemical Shift Data. J. Bioinform. Comput. Biol. 8 (5) (2010)
Charles H. Bennett, Péter Gács, Ming Li, Paul M. B. Vitányi, Wojciech H. Zurek
Information Distance CoRR (2010)
Ming Li
Can We Determine a Protein Structure Quickly? J. Comput. Sci. Technol. 25 (1) (2009)
Shuai Cheng Li, Ming Li
On two open problems of 2-interval patterns. Theor. Comput. Sci. 410 (24-25) (2009)
Dongbo Bu, Ming Li, Shuai Cheng Li, Jianbo Qian, Jinbo Xu
Finding compact structural motifs. Theor. Comput. Sci. 410 (30-32) (2009)
Chong Long, Jie Zhang, Minlie Huang, Xiaoyan Zhu, Ming Li, Bin Ma
Specialized Review Selection for Feature Rating Estimation. Web Intelligence (2009)
Xin Gao, Jinbo Xu, Shuai Cheng Li, Ming Li
Predicting Local Quality of a Sequence-Structure Alignment. J. Bioinform. Comput. Biol. 7 (5) (2009)
Chong Long, Minlie Huang, Xiaoyan Zhu, Ming Li
Multi-document Summarization by Information Distance. ICDM (2009)
Ying Xu, Ming Li, Tao Jiang
Preface. J. Comput. Sci. Technol. 25 (1) (2009)
Babak Alipanahi, Xin Gao, Emre Karakoç, Logan Donaldson, Ming Li
PICKY: a novel SVD-based NMR spectra peak picking method. Bioinform. 25 (12) (2009)
Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li
ZOOM! Zillions of oligos mapped. Bioinform. 24 (21) (2008)
Shuai Cheng Li, Dongbo Bu, Jinbo Xu, Ming Li
Finding Largest Well-Predicted Subset of Protein Structure Models. CPM (2008)
Paul M. B. Vitányi, Frank J. Balbach, Rudi Cilibrasi, Ming Li
Normalized Information Distance CoRR (2008)
Zefeng Zhang, Hao Lin, Ming Li
Mango: Multiple Alignment with n Gapped Oligos. J. Bioinform. Comput. Biol. 6 (3) (2008)
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li
Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. RECOMB (2008)
Xian Zhang, Yu Hao, Xiaoyan Zhu, Ming Li
New Information Distance Measure and Its Application in Question Answering System. J. Comput. Sci. Technol. 23 (4) (2008)
Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li
Designing succinct structural alphabets. ISMB (2008)
Chong Long, Xiaoyan Zhu, Ming Li, Bin Ma
Information shared by many objects. CIKM (2008)
Brendan Lucier, Tao Jiang, Ming Li
Average-case analysis of QuickSort and Binary Insertion Tree height using incompressibility. Inf. Process. Lett. 103 (2) (2007)
Bin Ma, Lusheng Wang, Ming Li
Near optimal multiple alignment within a band in polynomial time. J. Comput. Syst. Sci. 73 (6) (2007)
Ming Li
Invited Talk: Modern Homology Search. ISBRA (2007)
Xuefeng Cui, Tomás Vinar, Brona Brejová, Dennis E. Shasha, Ming Li
Homology search for genes. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Jing Zhang, Xi Chen, Ming Li
Computing Exact p-Value for Structured Motif. CPM (2007)
Ming Li
Information Distance and its Applications. Int. J. Found. Comput. Sci. 18 (4) (2007)
Ming Li
Information Distance from a Question to an Answer. COCOON (2007)
Ming Li, Paul M. B. Vitányi
Applications of algorithmic information theory. Scholarpedia 2 (5) (2007)
Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q. Zhang
-values for DNA motifs. Bioinform. 23 (5) (2007)
Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu
Finding Compact Structural Motifs. CPM (2007)
Xian Zhang, Yu Hao, Xiaoyan Zhu, Ming Li, David R. Cheriton
Information distance from a question to an answer. KDD (2007)
Bin Ma, Ming Li
On the complexity of the spaced seeds. J. Comput. Syst. Sci. 73 (7) (2007)
Ming Li
From Three Ideas in TCS to Three Applications in Bioinformatics. MFCS (2006)
Jian Liu, Bin Ma, Ming Li
Prima: Peptide Robust Identification from Ms/ms Spectra. J. Bioinform. Comput. Biol. 4 (1) (2006)
Ming Li
Information distance. GrC (2006)
Ming Li, Bin Ma, Louxin Zhang
Superiority and complexity of the spaced seeds. SODA (2006)
Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li
ONBRIRES: Ontology-Based Biological Relation Extraction System. APBC (2006)
Minlie Huang, Xiaoyan Zhu, Ming Li
A hybrid method for relation extraction from biomedical literature. Int. J. Medical Informatics 75 (6) (2006)
Shuai Cheng Li, Ming Li
On the Complexity of the Crossing Contact Map Pattern Matching Problem. WABI (2006)
Ming Li
Information Distance and Its Applications. CIAA (2006)
Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
Optimizing Multiple Spaced Seeds for Homology Search. J. Comput. Biol. 13 (7) (2006)
Jinbo Xu, Libo Yu, Ming Li
Consensus fold recognition by predicted model quality. APBC (2005)
Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar
ExonHunter: a comprehensive approach to gene finding. ISMB (Supplement of Bioinformatics) (2005)
Jian Liu, Ming Li
Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists. J. Comput. Biol. 12 (7) (2005)
Hao Yu, Xiaoyan Zhu, Minlie Huang, Ming Li
Discovering patterns to extract protein-protein interactions from the literature: Part II. Bioinform. 21 (15) (2005)
Jian Liu, Bin Ma, Ming Li
PRIME: Peptide robust identification from MS/MS spectra. APBC (2005)
Yu Hao, Xiaoyan Zhu, Ming Li
A New Algorithm for Pattern Optimization in Protein-Protein Interaction Extraction System. IbPRIA (2) (2005)
Derek Kisman, Ming Li, Bin Ma, Li Wang
tPatternHunter: gapped, fast and sensitive translated homology search . Bioinform. 21 (4) (2005)

Ming Li.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Ming Li