Emre Karakoç

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 2

Top Topics

High Throughput

Protein Interaction

Network Topology

Structural Properties

Top Venues

Int. J. Ad Hoc Ubiquitous Comput.

Publications

Gözde Yazici, Burcu Kurt Vatandaslar, Ilknur Aydin Canturk, Fatmagul I Aydinli, Ozge Arici Duz, Emre Karakoç, Bilal Ersen Kerman, Can Alkan
Identification of protein-protein interaction bridges for multiple sclerosis. Bioinform. 39 (4) (2023)
Emre Karakoç, Celal Çeken
Black hole attack prevention scheme using a blockchain-block approach in SDN-enabled WSN. Int. J. Ad Hoc Ubiquitous Comput. 37 (1) (2021)
Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms. Bioinform. 30 (5) (2014)
Babak Alipanahi, Xin Gao, Emre Karakoç, Shuai Cheng Li, Frank J. Balbach, Guangyu Feng, Logan Donaldson, Ming Li
Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. J. Bioinform. Comput. Biol. 9 (1) (2011)
Babak Alipanahi, Xin Gao, Emre Karakoç, Logan Donaldson, Ming Li
PICKY: a novel SVD-based NMR spectra peak picking method. Bioinform. 25 (12) (2009)
Emre Karakoç, Süleyman Cenk Sahinalp, Artem Cherkasov
Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human Metabolites. Pacific Symposium on Biocomputing (2007)
Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp
taveRNA: a web suite for RNA algorithms and applications. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp
Novel approaches for small biomolecule classification and structural similarity search. SIGKDD Explor. 9 (1) (2007)
Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler
RNA Secondary Structure Prediction Via Energy Density Minimization. RECOMB (2006)
Emre Karakoç, Süleyman Cenk Sahinalp, Artem Cherkasov
Comparative QSAR- and Fragments Distribution Analysis of Drugs, Druglikes, Metabolic Substances, and Antimicrobial Compounds. J. Chem. Inf. Model. 46 (5) (2006)
Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp
Distance based algorithms for small biomolecule classification and structural similarity search. ISMB (Supplement of Bioinformatics) (2006)
Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang
RNA-RNA Interaction Prediction and Antisense RNA Target Search. J. Comput. Biol. 13 (2) (2006)
Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang
RNA-RNA Interaction Prediction and Antisense RNA Target Search. RECOMB (2005)
Emre Karakoç, Z. Meral Özsoyoglu, Süleyman Cenk Sahinalp, Murat Tasan, Xiang Zhang
Novel Approaches to Biomolecular Sequence Indexing. IEEE Data Eng. Bull. 27 (3) (2004)