Kaizhong Zhang

Publication Activity (10 Years)

Years Active: 1989-2022
Publications (10 Years): 12

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

ISBRA

J. Comb. Optim.

ICCI*CC

Publications

Fang Han, Baozhen Shan, Kaizhong Zhang
De novo sequencing of multiple SILAC-based tandem mass spectra. ICCI*CC (2022)
Xuezhi Xie, Yuanyuan Han, Kaizhong Zhang
MHCherryPan: a novel pan-specific model for binding affinity prediction of class I HLA-peptide. Int. J. Data Min. Bioinform. 24 (3) (2020)
Boyu Feng, Jinfei Wang, Kaizhong Zhang
Patch-Based and Tensor-Patch-Based Dimension Reduction Methods for Hyperspectral Images. IGARSS (2019)
Xuezhi Xie, Yuanyuan Han, Kaizhong Zhang
MHCherryPan. a novel model to predict the binding affinity of pan-specific class I HLA-peptide. BIBM (2019)
Weiping Sun, Yi Liu, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang
An Improved Approach for N-Linked Glycan Structure Identification from HCD MS/MS Spectra. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (2) (2019)
Weiping Sun, Yi Liu, Kaizhong Zhang
An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy. Comput. Biol. Chem. 74 (2018)
Zhewei Liang, Gilles A. Lajoie, Kaizhong Zhang
NBPMF: Novel Peptide Mass Fingerprinting Based on Network Inference. Int. J. Cogn. Informatics Nat. Intell. 11 (4) (2017)
Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang
DISC: DISulfide linkage Characterization from tandem mass spectra. Bioinform. 33 (23) (2017)
Yi Liu, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Zhewei Liang, Gilles A. Lajoie, Kaizhong Zhang
NBPMF: Novel network-based inference methods for peptide mass fingerprinting. IEEE ICCI*CC (2017)
Yan Yan, Kaizhong Zhang
Spectra library assisted de novo peptide sequencing for HCD and ETD spectra pairs. BMC Bioinform. 17 (S-17) (2016)
Kaizhong Zhang
Similarity metric induced metrics with application in machine learning and bioinformatics. ICCI*CC (2016)
Yi Liu, Weiping Sun, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang
An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database. ISBRA (2015)
Weiping Sun, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang
A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry. ISBRA (2015)
Yi Liu, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra. ISBRA (2014)
Shihyen Chen, Zhuozhi Wang, Kaizhong Zhang
Pattern Matching and Local Alignment for RNA Structures. CoRR (2014)
Weiming Li, Bin Ma, Kaizhong Zhang
Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (2) (2014)
Shihyen Chen, Kaizhong Zhang
An improved algorithm for tree edit distance with applications for RNA secondary structure comparison. J. Comb. Optim. 27 (4) (2014)
Zhewei Liang, Kaizhong Zhang
Algorithms for local similarity between forests. J. Comb. Optim. 27 (1) (2014)
Weiming Li, Bin Ma, Kaizhong Zhang
Efficient filtration for similarity search with spaced k-mer neighbors. BIBM (2012)
Lei Hua, Jason T. L. Wang, Xiang Ji, Ankur Malhotra, Mugdha Khaladkar, Bruce A. Shapiro, Kaizhong Zhang
A Method for Discovering Common Patterns from Two RNA Secondary Structures and its Application to Structural Repeat Detection. J. Bioinform. Comput. Biol. 10 (4) (2012)
Zhewei Liang, Kaizhong Zhang
Algorithms for Forest Local Similarity. COCOA (2012)
Nikhil Bansal, Moshe Lewenstein, Bin Ma, Kaizhong Zhang
On the Longest Common Rigid Subsequence Problem. Algorithmica 56 (2) (2010)
Vandanaben Patel, Jason T. L. Wang, Shefali Setia, Anurag Verma, Charles D. Warden, Kaizhong Zhang
On Comparing Two Structured RNA Multiple alignments. J. Bioinform. Comput. Biol. 8 (6) (2010)
Kaizhong Zhang, Yunkun Zhu
Algorithms for Forest Pattern Matching. CPM (2010)
Qing Sun, Deyun Zhang, Yifeng Fan, Kaizhong Zhang, Bin Ma
Ancient Chinese zither (guqin) music recovery with support vector machine. ACM Journal on Computing and Cultural Heritage 3 (2) (2010)
Tieling Chen, Jinfei Wang, Kaizhong Zhang, William Tompkinson
Edge Extraction with Gradient Directions. IPCV (2009)
Weiming Li, Bin Ma, Kaizhong Zhang
Amino Acid Classification and Hash Seeds for Homology Search. BICoB (2009)
Shihyen Chen, Bin Ma, Kaizhong Zhang
On the similarity metric and the distance metric. Theor. Comput. Sci. 410 (24-25) (2009)
Bin Ma, Lei Xin, Kaizhong Zhang
A new quartet approach for reconstructing phylogenetic trees: quartet joining method. J. Comb. Optim. 16 (3) (2008)
Lusheng Wang, Kaizhong Zhang
Space Efficient Algorithms for Ordered Tree Comparison. Algorithmica 51 (3) (2008)
Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. 6 (1) (2008)
Rolf Backofen, Shihyen Chen, Danny Hermelin, Gad M. Landau, Mikhail A. Roytberg, Oren Weimann, Kaizhong Zhang
Locality and Gaps in RNA Comparison. J. Comput. Biol. 14 (8) (2007)
Sriram Chellappan, Wenjun Gu, Xiaole Bai, Dong Xuan, Bin Ma, Kaizhong Zhang
Deploying Wireless Sensor Networks under Limited Mobility Constraints. IEEE Trans. Mob. Comput. 6 (10) (2007)
Shihyen Chen, Kaizhong Zhang
An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity. COCOON (2007)
Shihyen Chen, Bin Ma, Kaizhong Zhang
The Normalized Similarity Metric and Its Applications. BIBM (2007)
Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC (2007)
Lei Xin, Bin Ma, Kaizhong Zhang
A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method. COCOON (2007)
Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler
RNA Secondary Structure Prediction Via Energy Density Minimization. RECOMB (2006)
Zimao Li, Lusheng Wang, Kaizhong Zhang
Algorithmic approaches for genome rearrangement: a review. IEEE Trans. Syst. Man Cybern. Syst. 36 (5) (2006)
Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian, Kaizhong Zhang
RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research. BIBE (2006)
Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang
RNA-RNA Interaction Prediction and Antisense RNA Target Search. J. Comput. Biol. 13 (2) (2006)
Bin Ma, Lieyu Wu, Kaizhong Zhang
Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. J. Bioinform. Comput. Biol. 4 (3) (2006)
Jinfei Wang, Tieling Chen, Kaizhong Zhang, William Tompkinson
Applying a wavelet method and linda for extracting detailed cartographic features from high resolution images. IGARSS (2005)
Bin Ma, Lieyu Wu, Kaizhong Zhang
Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. International Conference on Computational Science (2) (2005)
Bin Ma, Kaizhong Zhang
On the Longest Common Rigid Subsequence Problem. CPM (2005)
Yonghua Han, Bin Ma, Kaizhong Zhang
Sequencing Error. J. Bioinform. Comput. Biol. 3 (3) (2005)
Yonghua Han, Bin Ma, Kaizhong Zhang
An automata approach to match gapped sequence tags against protein database. Int. J. Found. Comput. Sci. 16 (3) (2005)
Zhuozhi Wang, Kaizhong Zhang
Multiple Rna Structure Alignment. J. Bioinform. Comput. Biol. 3 (3) (2005)
Jason Tsong-Li Wang, Xiong Wang, Dennis E. Shasha, Kaizhong Zhang
MetricMap: an embedding technique for processing distance-based queries in metric spaces. IEEE Trans. Syst. Man Cybern. Part B 35 (5) (2005)
Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang
RNA-RNA Interaction Prediction and Antisense RNA Target Search. RECOMB (2005)
Bin Ma, Kaizhong Zhang, Chengzhi Liang
An effective algorithm for peptide de novo sequencing from MS/MS spectra. J. Comput. Syst. Sci. 70 (3) (2005)
Lusheng Wang, Kaizhong Zhang
Space Efficient Algorithms for Ordered Tree Comparison. ISAAC (2005)
Lucian Ilie, Sheng Yu, Kaizhong Zhang
Word Complexity And Repetitions In Words. Int. J. Found. Comput. Sci. 15 (1) (2004)
Yonghua Han, Bin Ma, Kaizhong Zhang
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. CSB (2004)
Yonghua Han, Bin Ma, Kaizhong Zhang
An Automata Approach to Match Gapped Sequence Tags Against Protein Database. CIAA (2004)
Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang
Finding Conserved Well-Ordered RNA Structures In Genomic Sequences. Int. J. Comput. Intell. Appl. 4 (4) (2004)
Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang
An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. CSB (2004)
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
The longest common subsequence problem for arc-annotated sequences. J. Discrete Algorithms 2 (2) (2004)
Zhuozhi Wang, Kaizhong Zhang
Multiple RNA Structure Alignment. CSB (2004)
Bin Ma, Zhuozhi Wang, Kaizhong Zhang
Alignment between Two Multiple Alignments. CPM (2003)
Bin Ma, Kaizhong Zhang, Chengzhi Liang
An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum. CPM (2003)
Jason Tsong-Li Wang, Kaizhong Zhang, George Jyh-Shian Chang, Dennis E. Shasha
Finding approximate patterns in undirected acyclic graphs. Pattern Recognit. 35 (2) (2002)
Tieling Chen, Jinfei Wang, Kaizhong Zhang
A wavelet transform based method for road extraction from high-resolution remotely sensed data. IGARSS (2002)
Lucian Ilie, Sheng Yu, Kaizhong Zhang
Repetition Complexity of Words. DCFS (2002)
Dennis E. Shasha, Jason Tsong-Li Wang, Huiyuan Shan, Kaizhong Zhang
ATreeGrep: Approximate Searching in Unordered Trees. SSDBM (2002)
Lucian Ilie, Sheng Yu, Kaizhong Zhang
Repetition Complexity of Words. COCOON (2002)
Bin Ma, Lusheng Wang, Kaizhong Zhang
Computing similarity between RNA structures. Theor. Comput. Sci. 276 (1-2) (2002)
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
A General Edit Distance between RNA Structures. J. Comput. Biol. 9 (2) (2002)
Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang
Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. IEEE Trans. Knowl. Data Eng. 14 (4) (2002)
Lusheng Wang, Kaizhong Zhang, Louxin Zhang
Perfect phylogenetic networks with recombination. SAC (2001)
Lusheng Wang, Kaizhong Zhang, Louxin Zhang
Perfect Phylogenetic Networks with Recombination. J. Comput. Biol. 8 (1) (2001)
Guohui Lin, Bin Ma, Kaizhong Zhang
Edit distance between two RNA structures. RECOMB (2001)
Zhuozhi Wang, Kaizhong Zhang
Alignment between Two RNA Structures. MFCS (2001)
Gregory D. Collins, Shu-Yun Le, Kaizhong Zhang
A new algorithm for computing similarity between RNA structures. Inf. Sci. 139 (1-2) (2001)
Jason Tsong-Li Wang, Kaizhong Zhang
Finding similar consensus between trees: an algorithm and a distance hierarchy. Pattern Recognit. 34 (1) (2001)
Jason Tsong-Li Wang, Kaizhong Zhang
Identifying consensus of trees through alignment. Inf. Sci. 126 (1-4) (2000)
Xiong Wang, Jason Tsong-Li Wang, King-Ip (David) Lin, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang
An Index Structure for Data Mining and Clustering. Knowl. Inf. Syst. 2 (2) (2000)
Jason Tsong-Li Wang, Xiong Wang, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg
An Approximate Search Engine for Structural Databases. SIGMOD Conference (2000)
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
The Longest Common Subsequence Problem for Arc-Annotated Sequences. CPM (2000)
Jason Tsong-Li Wang, Xiong Wang, King-Ip (David) Lin, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang
Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering. KDD (1999)
Zhuozhi Wang, Kaizhong Zhang
Finding Common RNA Secondary Structures from RNA Sequences. CPM (1999)
Jason Tsong-Li Wang, Kaizhong Zhang, Chia-Yo Chang
Identifying Approximately Common Substructures in Trees Based on a Restricted Edit Distance. Inf. Sci. 121 (3-4) (1999)
Kaizhong Zhang, Lusheng Wang, Bin Ma
Computing Similarity between RNA Structures. CPM (1999)
Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis E. Shasha, Kaizhong Zhang, Kathleen M. Currey
An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees. IEEE Trans. Pattern Anal. Mach. Intell. 20 (8) (1998)
Yanling Yang, Kaizhong Zhang, Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha
An Approximate Oracle for Distance in Metric Spaces. CPM (1998)
Kaizhong Zhang
Efficient Parallel Algorithm for the Editing Distance between Ordered Trees. CPM (1998)
Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang
Automated Discovery of Active Motifs in Three Dimensional Molecules. KDD (1997)
Jason Tsong-Li Wang, Dennis E. Shasha, George Jyh-Shian Chang, Liam Relihan, Kaizhong Zhang, Girish Patel
Structural Matching and Discovery in Document Databases. SIGMOD Conference (1997)
Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis E. Shasha, Kaizhong Zhang, Chia-Yo Chang
Automated Discovery of Active Motifs in Multiple RNA Secondary Structures. KDD (1996)
Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang
On the Complexity of Comparing Evolutionary Trees. Discret. Appl. Math. 71 (1-3) (1996)
Jinfei Wang, Kaizhong Zhang
Linear Cartographic Data Acquisition from Scanned Topographic Maps. Ann. GIS 2 (1&2) (1996)
Shouwen Tang, Kaizhong Zhang, Xiaolin Wu
Fast Algorithms for Minimum Matrix Norm with Application in Computer Graphics. Algorithmica 15 (1) (1996)
Kaizhong Zhang, Jason Tsong-Li Wang, Dennis E. Shasha
On the Editing Distance Between Undirected Acyclic Graphs. Int. J. Found. Comput. Sci. 7 (1) (1996)
Kaizhong Zhang
A Constrained Edit Distance Between Unordered Labeled Trees. Algorithmica 15 (3) (1996)
Kaizhong Zhang
Efficient Parallel Algorithms for Tree Editing Problems. CPM (1996)
Tao Jiang, Lusheng Wang, Kaizhong Zhang
Alignment of Trees - An Alternative to Tree Edit. Theor. Comput. Sci. 143 (1) (1995)
Kaizhong Zhang, Jason Tsong-Li Wang, Dennis E. Shasha
On the Editing Distance between Undirected Acyclic Graphs and Related Problems. CPM (1995)
Jinfei Wang, Kaizhong Zhang, Shouwen Tang
Spectral and spatial decorrelation of Landsat-TM data for lossless compression. IEEE Trans. Geosci. Remote. Sens. 33 (5) (1995)
Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang
On the Complexity of Comparing Evolutionary Trees (Extended Abstract). CPM (1995)

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Publication Activity (10 Years)

Top Topics

Top Venues

Kaizhong Zhang