Isidore Rigoutsos

Publication Activity (10 Years)

Years Active: 1986-2022
Publications (10 Years): 7

Top Topics

Differentially Expressed

Gene Expression

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Nestoras Karathanasis, Daniel Hwang, Vibol Heng, Rimal Abhimannyu, Phillip Slogoff-Sevilla, Gina Buchel, Victoria Frisbie, Peiyao Li, Dafni Kryoneriti, Isidore Rigoutsos
Reproducibility efforts as a teaching tool: A pilot study. PLoS Comput. Biol. 18 (11) (2022)
Phillipe Loher, Nestoras Karathanasis, Eric Londin, Paul F. Bray, Venetia Pliatsika, Aristeidis G. Telonis, Isidore Rigoutsos
IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets. Bioinform. 37 (13) (2021)
Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. 36 (3) (2020)
Venetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G. Telonis, Eric Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos
MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects. Nucleic Acids Res. 46 (Database-Issue) (2018)
Rogan Magee, Phillipe Loher, Eric Londin, Isidore Rigoutsos
Threshold-seq: a tool for determining the threshold in short RNA-seq datasets. Bioinform. 33 (13) (2017)
Aristeidis G. Telonis, Phillipe Loher, Yohei Kirino, Isidore Rigoutsos
Consequential considerations when mapping tRNA fragments. BMC Bioinform. 17 (2016)
Venetia Pliatsika, Phillipe Loher, Aristeidis G. Telonis, Isidore Rigoutsos
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments. Bioinform. 32 (16) (2016)
Phillipe Loher, Isidore Rigoutsos
Interactive exploration of RNA22 microRNA target predictions. Bioinform. 28 (24) (2012)
Tien Huynh, Michail Vlachos, Isidore Rigoutsos
Anchoring millions of distinct reads on the human genome within seconds. EDBT (2010)
Aristotelis Tsirigos, Isidore Rigoutsos
Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes. PLoS Comput. Biol. 5 (12) (2009)
Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory Stephanopoulos
A generic motif discovery algorithm for sequential data. Bioinform. 22 (1) (2006)
Irene M. Mullins, Mir S. Siadaty, Jason A. Lyman, Ken Scully, Carleton T. Garrett, W. Greg Miller, Rudy Muller, Barry Robson, Chid Apté, Sholom M. Weiss, Isidore Rigoutsos, Daniel E. Platt, Simona Cohen, William A. Knaus
Data mining and clinical data repositories: Insights from a 667, 000 patient data set. Comput. Biol. Medicine 36 (12) (2006)
Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
Report on BIOKDD04: workshop on data mining in Bioinformatics. SIGKDD Explor. 6 (2) (2004)
Tien Huynh, Isidore Rigoutsos
The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Isidore Rigoutsos
Of parts and relationships: an unending quest. CIKM (2004)
Isidore Rigoutsos, Tien Huynh
Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM). CEAS (2004)
Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya
The web server of IBM's Bioinformatics and Pattern Discovery group. Nucleic Acids Res. 31 (13) (2003)
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19 (6) (2003)
Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang
Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. IEEE Trans. Knowl. Data Eng. 14 (4) (2002)
Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt
An Output-Sensitive Flexible Pattern Discovery Algorithm. CPM (2001)
Daniel E. Platt, Laxmi Parida, Yuan Gao, Aris Floratos, Isidore Rigoutsos
QSAR in grossly underdetermined systems: Opportunities and issues. IBM J. Res. Dev. 45 (3) (2001)
Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Yuan Gao
DELPHI: A pattern-based method for detecting sequence similarity. IBM J. Res. Dev. 45 (3) (2001)
Aris Floratos, Igor Jurisica, Isidore Rigoutsos
Knowledge discovery in biological domains (tutorial AM-3). KDD Tutorial Notes (2000)
Laxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao
Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm. SODA (2000)
Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustavo Stolovitzky, Yuan Gao
Sequence homology detection through large scale pattern discovery. RECOMB (1999)
Laxmi Parida, Aris Floratos, Isidore Rigoutsos
An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery. J. Comb. Optim. 3 (2-3) (1999)
Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida
Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes. ISMB (1999)
Isidore Rigoutsos, Aris Floratos
Motif discovery without alignment or enumeration (extended abstract). RECOMB (1998)
Isidore Rigoutsos, Aris Floratos
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229]. Bioinform. 14 (1) (1998)
Isidore Rigoutsos
Well-Behaved, Tunable 3D-Affine Invariants. CVPR (1998)
Isidore Rigoutsos, Alex Delis
Managing Statistical Behavior of Large Data Sets in Shared-Nothing Architectures. IEEE Trans. Parallel Distributed Syst. 9 (11) (1998)
Isidore Rigoutsos
Two-Dimensional Affine Invariants that Distribute Uniformly and can be Tuned to any Convex Feature Domain. ICCV (1998)
Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang
Automated Discovery of Active Motifs in Three Dimensional Molecules. KDD (1997)
Isidore Rigoutsos, Alex Delis
The Impact of Hashing Function Choice on the Load Balancing in Very Large Dartasets. SEKE (1996)
Isidore Rigoutsos, Robert A. Hummel
A Bayesian Approach to Model Matching with Geometric Hashing. Comput. Vis. Image Underst. 62 (1) (1995)
Isidore Rigoutsos, Robert A. Hummel
Distributed Bayesian object recognition. CVPR (1993)
Andrea Califano, Isidore Rigoutsos
FLASH: a fast look-up algorithm for string homology. CVPR (1993)
Andrea Califano, Isidore Rigoutsos
FLASH: A Fast Look-Up Algorithm for String Homology. ISMB (1993)
Isidore Rigoutsos, Robert A. Hummel
Massively Parallel Model Matching: Geometric Hashing on the Connection Machine. Computer 25 (2) (1992)
Marsha J. Berger, Isidore Rigoutsos
An algorithm for point clustering and grid generation. IEEE Trans. Syst. Man Cybern. 21 (5) (1991)
Yiannis Aloimonos, Isidore Rigoutsos
Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective Projection. AAAI (1986)