Shinichi Morishita

Publication Activity (10 Years)

Years Active: 1986-2023
Publications (10 Years): 8

Top Topics

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Bansho Masutani, Riki Kawahara, Shinichi Morishita
Decomposing mosaic tandem repeats accurately from long reads. Bioinform. 39 (4) (2023)
Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita
Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing. PLoS Comput. Biol. 17 (1) (2021)
Shinichi Morishita, Kazuki Ichikawa, Eugene W. Myers
Finding long tandem repeats in long noisy reads. Bioinform. 37 (5) (2021)
Ryo Nakabayashi, Shinichi Morishita
HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C. Bioinform. 36 (13) (2020)
Bansho Masutani, Shinichi Morishita
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. Bioinform. 35 (4) (2019)
Bansho Masutani, Shinichi Morishita
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. Bioinform. 35 (8) (2019)
Yadong Wang, Kevin Burrage, Yunlong Liu, Shinichi Morishita, Tianhai Tian, Qinghua Jiang, Jiangning Song, Guohua Wang, Qian Zhu, Xiaohua Tony Hu
Preface. BIBM (2016)
Yuta Suzuki, Jonas Korlach, Stephen W. Turner, Tatsuya Tsukahara, Junko Taniguchi, Wei Qu, Kazuki Ichikawa, Jun Yoshimura, Hideaki Yurino, Yuji Takahashi, Jun Mitsui, Hiroyuki Ishiura, Shoji Tsuji, Hiroyuki Takeda, Shinichi Morishita
AgIn: measuring the landscape of CpG methylation of individual repetitive elements. Bioinform. 32 (19) (2016)
Kazuki Ichikawa, Shinichi Morishita
A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states. BMC Genom. 16 (S-2) (2015)
Kazuki Ichikawa, Shinichi Morishita
A Simple but Powerful Heuristic Methodfor Accelerating $k$ -Means Clusteringof Large-Scale Data in Life Science. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (4) (2014)
Koichiro Doi, Taku Monjo, Pham H. Hoang, Jun Yoshimura, Hideaki Yurino, Jun Mitsui, Hiroyuki Ishiura, Yuji Takahashi, Yaeko Ichikawa, Jun Goto, Shoji Tsuji, Shinichi Morishita
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing. Bioinform. 30 (6) (2014)
Atsushi Sasaki, Shinichi Morishita
Poster: Robust estimation of DNA methylation with local regression. ICCABS (2011)
Shinichi Morishita
Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs. ICCABS (2011)
Hongyan Wu, Taro L. Saito, Shinichi Morishita
Accelerating Path-free XML Queries in RDBMS. Inf. Media Technol. 6 (1) (2011)
Budrul Ahsan, Taro L. Saito, Shin-ichi Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi Sasaki, Kouji Matsushima, Toshiro Aigaki, Shinichi Morishita
5'-end mRNA transcription database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu, Shinichi Morishita
UTGB toolkit for personalized genome browsers. Bioinform. 25 (15) (2009)
Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. BMC Bioinform. 10 (2009)
Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro Kasahara, Shin Sasaki, Taro L. Saito, Yukinobu Nagayasu, Koichiro Doi, Yoichiro Nakatani, Wei Qu, Tomoko Jindo, Atsuko Shimada, Kiyoshi Naruse, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita
UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res. 36 (Database-Issue) (2008)
Taro L. Saito, Shinichi Morishita
Relational-style XML query. SIGMOD Conference (2008)
Taro L. Saito, Shinichi Morishita
Efficient Integration of Structure Indexes of XML. DASFAA (2007)
Taro L. Saito, Shinichi Morishita
Amoeba Join: Overcoming Structural Fluctuations in XML Data. WebDB (2006)
Tomoyuki Yamada, Haruhiko Soma, Shinichi Morishita
PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Yasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita
5'SAGE: 5'-end Serial Analysis of Gene Expression database. Nucleic Acids Res. 33 (Database-Issue) (2005)
Taro L. Saito, Jun Sese, Yoichiro Nakatani, Fumi Sano, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita
morphological database. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Tomoyuki Yamada, Shinichi Morishita
Accelerated off-target search algorithm for siRNA. Bioinform. 21 (8) (2005)
Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Tomoyuki Yamada, Shinichi Morishita
Computing Highly Specific and Noise-tolerant Oligomers Efficiently. J. Bioinform. Comput. Biol. 2 (1) (2004)
Raghu Ramakrishnan, Rakesh Agrawal, Johann-Christoph Freytag, Toni Bollinger, Christopher W. Clifton, Saso Dzeroski, Jochen Hipp, Daniel A. Keim, Stefan Kramer, Hans-Peter Kriegel, Ulf Leser, Bing Liu, Heikki Mannila, Rosa Meo, Shinichi Morishita, Raymond T. Ng, Jian Pei, Prabhakar Raghavan, Myra Spiliopoulou, Jaideep Srivastava, Vicenç Torra
Data Mining: The Next Generation. Perspectives Workshop: Data Mining: The Next Generation (2004)
Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe, Masashi Yukawa, Yoshikazu Ohya, Shinichi Morishita
SCMD: Saccharomyces cerevisiae Morphological Database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
Report on BIOKDD04: workshop on data mining in Bioinformatics. SIGKDD Explor. 6 (2) (2004)
Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita
Constrained clusters of gene expression profiles with pathological features. Bioinform. 20 (17) (2004)
Jun Sese, Shinichi Morishita
Itemset Classified Clustering. PKDD (2004)
Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita
Development of Image Processing Program for Yeast Cell Morphology. J. Bioinform. Comput. Biol. 1 (4) (2004)
Jun Ogasawara, Shinichi Morishita
A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome. J. Bioinform. Comput. Biol. 1 (2) (2003)
Tomoyuki Yamada, Shinichi Morishita
Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently. CSB (2003)
Setsuo Arikawa, Koichi Furukawa, Shinichi Morishita, Hiroshi Motoda
Preface. Theor. Comput. Sci. 292 (2) (2003)
Jun Ogasawara, Shinichi Morishita
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome. CSB (2002)
Jie Cheng, Christos Hatzis, Hisashi Hayashi, Mark-A. Krogel, Shinichi Morishita, David Page, Jun Sese
KDD Cup 2001 Report. SIGKDD Explor. 3 (2) (2002)
Shinichi Morishita
Computing Optimal Hypotheses Efficiently for Boosting. Progress in Discovery Science (2002)
Jun Sese, Shinichi Morishita
Answering the Most Correlated N Association Rules Efficiently. PKDD (2002)
Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, Shinichi Morishita
The Gene Resource Locator: gene locus maps for transcriptome analysis. Nucleic Acids Res. 30 (1) (2002)
Jun Ogasawara, Shinichi Morishita
Practical Software for Aligning ESTs to Human Genome. CPM (2002)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Data Mining with optimized two-dimensional association rules. ACM Trans. Database Syst. 26 (2) (2001)
Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita
Efficient Construction of Regression Trees with Range and Region Splitting. Mach. Learn. 45 (3) (2001)
Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita, Kousaku Okubo
BodyMap incorporated PCR-based expression profiling data and a gene ranking system. Nucleic Acids Res. 29 (1) (2001)
Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, Kousaku Okubo
BodyMap: a human and mouse gene expression database. Nucleic Acids Res. 28 (1) (2000)
Shinichi Morishita, Jun Sese
Traversing Itemset Lattice with Statistical Metric Pruning. PODS (2000)
Akihiro Nakaya, Shinichi Morishita
Weighted Majority Decision among Region Rules for a Categorical Dataset. Discovery Science (1999)
Akihiro Nakaya, Hideharu Furukawa, Shinichi Morishita
Weighted Majority Decision among Several Region Rules for Scientific Discovery. Discovery Science (1999)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Mining Optimized Association Rules for Numeric Attributes. J. Comput. Syst. Sci. 58 (1) (1999)
Shinichi Morishita, Akihiro Nakaya
Parallel Branch-and-Bound Graph Search for Correlated Association Rules. Large-Scale Parallel Data Mining (1999)
Shinichi Morishita, Teruyoshi Hishiki, Kousaku Okubo
Towards Mining Gene Expression Database. 1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery (1999)
Shinichi Morishita
On Classification and Regression. Discovery Science (1998)
Shinichi Morishita
Avoiding Cartesian products for multiple joins. J. ACM 44 (1) (1997)
Kunikazu Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Computing Optimized Rectilinear Regions for Association Rules. KDD (1997)
Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita
Efficient Construction of Regression Trees with Range and Region Splitting. VLDB (1997)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
SONAR: System for Optimized Numeric AssociationRules. SIGMOD Conference (1996)
Shinichi Morishita
An Extension of Van Gelder's Alternating Fixpoint to Magic Programs. J. Comput. Syst. Sci. 52 (3) (1996)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Constructing Efficient Decision Trees by Using Optimized Numeric Association Rules. VLDB (1996)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and Visualization. SIGMOD Conference (1996)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Interval Finding and Its Application to Data Mining. ISAAC (1996)
Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama
Mining Optimized Association Rules for Numeric Attributes. PODS (1996)
Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps
The Glue-Nail Deductive Database System: Design, Implementation, and Evaluation VLDB J. 3 (2) (1994)
Shinichi Morishita
An Alternating Fixpoint Tailored to Magic Programs. PODS (1993)
Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps
Design and Implementation of the Glue-Nail Database System. SIGMOD Conference (1993)
Shinichi Morishita
An anternating fixpoint tailored to magic programs. Workshop on Deductive Databases, JICSLP (1992)
Shinichi Morishita
Avoiding Cartesian Products in Programs for Multiple Joins. PODS (1992)
Kouichi Fukunaga, Shinichi Morishita
Lattice Programming Methodology. LP (1988)
Shinichi Morishita, Masayuki Numao, Shin'ichi Hirose
Symbolical Construction of Truth Value Domain for Logic Program. ICLP (1987)
Shinichi Morishita, Masayuki Numao
Prolog Computation Model BPM and its Debugger PROEDIT2. LP (1986)