A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer.
Bansho MasutaniShinichi MorishitaPublished in: Bioinform. (2019)
Keyphrases
- detection algorithm
- cost function
- dynamic programming
- detection method
- high accuracy
- matching algorithm
- preprocessing
- k means
- significant improvement
- computational cost
- learning algorithm
- optimization algorithm
- particle swarm optimization
- experimental evaluation
- np hard
- computational complexity
- genetic algorithm
- times faster
- bayesian framework
- probabilistic model
- search space
- objective function
- image segmentation
- decision trees
- convergence rate
- dna sequences
- improved algorithm
- multiple instance learning
- graph based algorithm