Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes.
Isidore RigoutsosYuan GaoAris FloratosLaxmi ParidaPublished in: ISMB (1999)
Keyphrases
- rna sequences
- genome sequences
- sequential patterns
- sequence analysis
- sequence data
- biological sequences
- nucleotide sequences
- dna sequences
- protein sequences
- computational biology
- secondary structure
- protein families
- rna secondary structures
- motif discovery
- genomic sequences
- recurring patterns
- phylogenetic analysis
- escherichia coli
- coding regions
- frequent sequences
- hidden markov models
- sequence alignment
- phylogenetic trees
- human genome
- comparative analysis
- episode rules
- pattern mining
- free energy
- temporal patterns
- feature space
- knowledge discovery
- text mining
- frequent patterns
- transcription factor binding sites
- mining algorithm
- data mining tasks
- sequential pattern mining
- computational methods
- data mining algorithms
- molecular biology
- association rule mining
- temporal association rules
- rule discovery
- tree structures
- binding sites