Tetsuo Shibuya

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 35

Top Topics

Protein Secondary Structure

Haar Wavelet Transform

Statistical Analysis

Differentially Private

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Robert D. Barish, Tetsuo Shibuya
Counting on Rainbow k-Connections. TAMC (2024)
Robert D. Barish, Tetsuo Shibuya
Proper colorability of segment intersection graphs. J. Comb. Optim. 47 (4) (2024)
Akito Yamamoto, Tetsuo Shibuya
Privacy-Optimized Randomized Response for Sharing Multi-Attribute Data. CoRR (2024)
Robert D. Barish, Tetsuo Shibuya
Recognition and Proper Coloring of Unit Segment Intersection Graphs. SWAT (2024)
Robert D. Barish, Tetsuo Shibuya
Hardness of Bounding Influence via Graph Modification. SOFSEM (2023)
Zixuan Wang, Yi Zhou, Tatsuya Takagi, Jiangning Song, Yu-Shi Tian, Tetsuo Shibuya
Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data. BMC Bioinform. 24 (1) (2023)
Akito Yamamoto, Tetsuo Shibuya
Privacy-Preserving Genomic Statistical Analysis Under Local Differential Privacy. DBSec (2023)
Akito Yamamoto, Tetsuo Shibuya
Privacy-Preserving Publication of GWAS Statistics using Smooth Sensitivity. PST (2023)
Akito Yamamoto, Eizen Kimura, Tetsuo Shibuya
(ε, k)-Randomized Anonymization: ε-Differentially Private Data Sharing with k-Anonymity. HEALTHINF (2023)
Akito Yamamoto, Tetsuo Shibuya
A Joint Permute-and-Flip and Its Enhancement for Large-Scale Genomic Statistical Analysis. ICDM (Workshops) (2023)
Quentin Hillebrand, Vorapong Suppakitpaisarn, Tetsuo Shibuya
Communication Cost Reduction for Subgraph Counting under Local Differential Privacy via Hash Functions. CoRR (2023)
Akito Yamamoto, Tetsuo Shibuya
Privacy-Preserving Statistical Analysis of Genomic Data Using Compressive Mechanism with Haar Wavelet Transform. J. Comput. Biol. 30 (2) (2023)
Quentin Hillebrand, Vorapong Suppakitpaisarn, Tetsuo Shibuya
Unbiased Locally Private Estimator for Polynomials of Laplacian Variables. KDD (2023)
Robert D. Barish, Tetsuo Shibuya
The Fine-Grained Complexity of Approximately Counting Proper Connected Colorings (Extended Abstract). COCOA (2) (2023)
Robert D. Barish, Tetsuo Shibuya
Proper Colorability of Segment Intersection Graphs. COCOON (2022)
Akito Yamamoto, Tetsuo Shibuya
Efficient and Highly Accurate Differentially Private Statistical Genomic Analysis using Discrete Fourier Transform. TrustCom (2022)
Robert D. Barish, Tetsuo Shibuya
String Editing Under Pattern Constraints. ICS (2022)
Robert D. Barish, Tetsuo Shibuya
Diamonds are Forever in the Blockchain: Geometric Polyhedral Point-Set Pattern Matching. CCCG (2022)
Robert D. Barish, Tetsuo Shibuya
Counting on a Rainbow Connection (text not included). ICTCS (2022)
Arda Akdemir, Yeojoo Jeon, Tetsuo Shibuya
Developing Language Resources and NLP Tools for the North Korean Language. LREC (2022)
Arda Akdemir, Tetsuo Shibuya
UDON: Unsupervised Data SelectiON for Biomedical Entity Recognition. ICCBD (2021)
Akito Yamamoto, Tetsuo Shibuya
Differentially Private Linkage Analysis with TDT - the case of two affected children per family. BIBM (2021)
Kazushi Kitaya, Tetsuo Shibuya
Compression of Multiple k-Mer Sets by Iterative SPSS Decomposition. WABI (2021)
Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi
Nanopore basecalling from a perspective of instance segmentation. BMC Bioinform. (3) (2020)
Arda Akdemir, Tetsuo Shibuya
Transfer Learning for Biomedical Question Answering. CLEF (Working Notes) (2020)
Arda Akdemir, Tetsuo Shibuya
Analyzing the Effect of Multi-task Learning for Biomedical Named Entity Recognition. CoRR (2020)
Arda Akdemir, Tetsuo Shibuya, Tunga Güngör
Subword Contextual Embeddings for Languages with Rich Morphology. ICMLA (2020)
Arda Akdemir, Tetsuo Shibuya, Tunga Güngör
Hierarchical Multi Task Learning with Subword Contextual Embeddings for Languages with Rich Morphology. CoRR (2020)
Taku Onodera, Tetsuo Shibuya
Wear Leveling Revisited. ISAAC (2020)
Tetsuo Shibuya
Application-Oriented Succinct Data Structures for Big Data. Rev. Socionetwork Strateg. 13 (2) (2019)
Yoichi Sasaki, Tetsuo Shibuya, Kimihito Ito, Hiroki Arimura
Efficient Approximate 3-Dimensional Point Set Matching Using Root-Mean-Square Deviation Score. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (9) (2019)
Naoki Katoh, Yuya Higashikawa, Hiro Ito, Shun Kataoka, Takuya Kida, Toshiki Saitoh, Tetsuo Shibuya, Kazuyuki Tanaka, Yushi Uno
Preface for the Special Issue on the Project "Foundation of Innovative Algorithms for Big Data". Rev. Socionetwork Strateg. 13 (2) (2019)
Taku Onodera, Tetsuo Shibuya
Succinct Oblivious RAM. CoRR (2018)
Taku Onodera, Tetsuo Shibuya
Succinct Oblivious RAM. STACS (2018)
Taku Onodera, Tetsuo Shibuya
Fast Classification of Protein Structures by an Alignment-Free Kernel. SPIRE (2016)
Tetsuo Shibuya, Chuan Yi Tang, Paul Horton, Kiyoshi Asai
Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014). IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Yang Li, Tetsuo Shibuya
Malphite: A convolutional neural network and ensemble learning based protein secondary structure predictor. BIBM (2015)
Mohammad A. Eita, Tetsuo Shibuya, Amin A. Shoukry
Locating controlling regions of neural networks using constrained evolutionary computation. CEC (2015)
Yoichi Sasaki, Tetsuo Shibuya, Kimihito Ito, Hiroki Arimura
Efficient Approximate 3-Dimensional Point Set Matching Using Root-Mean-Square Deviation Score. SISAP (2015)
Wing-Kin Sung, Kunihiko Sadakane, Tetsuo Shibuya, Abha Belorkar, Iana Pyrogova
An O(m, log m)-Time Algorithm for Detecting Superbubbles. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Tetsuo Shibuya, Chuan Yi Tang, Paul Horton, Kiyoshi Asai
Editorial. J. Bioinform. Comput. Biol. 12 (6) (2014)
Sherin M. ElGokhy, Tetsuo Shibuya, Amin A. Shoukry
Improving miRNA Classification Using an Exhaustive Set of Features. PACBB (2014)
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints. AlCoB (2014)
Taku Onodera, Tetsuo Shibuya
The Gapped Spectrum Kernel for Support Vector Machines. MLDM (2013)
Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
Detecting Superbubbles in Assembly Graphs. WABI (2013)
Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
Detecting Superbubbles in Assembly Graphs. CoRR (2013)
Mohammed Sahli, Tetsuo Shibuya
Max-Shift BM and Max-Shift Horspool: Practical Fast Exact String Matching Algorithms. Inf. Media Technol. 7 (2) (2012)
Mohammed Sahli, Tetsuo Shibuya
Max-Shift BM and Max-Shift Horspool: Practical Fast Exact String Matching Algorithms. J. Inf. Process. 20 (2) (2012)
Ritsuko Onuki, Ryo Yamada, Rui Yamaguchi, Minoru Kanehisa, Tetsuo Shibuya
Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering. J. Comput. Biol. 19 (1) (2012)
Genki Terashi, Tetsuo Shibuya, Mayuko Takeda-Shitaka
LB3D: A Protein Three-Dimensional Substructure Search Program Based on the Lower Bound of a Root Mean Square Deviation Value. J. Comput. Biol. 19 (5) (2012)
Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya
Succinct de Bruijn Graphs. WABI (2012)
Taku Onodera, Tetsuo Shibuya
An Index Structure for Spaced Seed Search. ISAAC (2011)
Daisuke Kimura, Tetsuji Kuboyama, Tetsuo Shibuya, Hisashi Kashima
A Subpath Kernel for Rooted Unordered Trees. PAKDD (1) (2011)
Tetsuo Shibuya
Geometric suffix tree: Indexing protein 3-D structures. J. ACM 57 (3) (2010)
Tetsuo Shibuya
Fast Hinge Detection Algorithms for Flexible Protein Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (2) (2010)
Tetsuo Shibuya
Searching Protein 3-D Structures in Linear Time. J. Comput. Biol. 17 (3) (2010)
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
Linear-time protein 3-D structure searching with insertions and deletions. Algorithms Mol. Biol. 5 (2010)
Tetsuo Shibuya
Searching Protein Three-Dimensional Structures in Faster Than Linear Time. J. Comput. Biol. 17 (4) (2010)
Ben Hachimori, Tetsuo Shibuya
Lazy Suffix Array: The Data Structure for Online Construction and Pattern Searching. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (8) (2009)
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions. WABI (2009)
Tetsuo Shibuya
Searching Protein 3-D Structures in Linear Time. RECOMB (2009)
Tetsuo Shibuya
Efficient Substructure RMSD Query Algorithms. J. Comput. Biol. 14 (9) (2007)
Tetsuo Shibuya
Prefix-Shuffled Geometric Suffix Tree. SPIRE (2007)
Tetsuo Shibuya
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures. CPM (2006)
Tetsuo Shibuya
Generalization of a Suffix Tree for RNA Structural Pattern Matching. Algorithmica 39 (1) (2004)
Tetsuo Shibuya, Hisashi Kashima, Akihiko Konagaya
Efficient filtering methods for clustering cDNAs with spliced sequence alignment. Bioinform. 20 (1) (2004)
Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya
The web server of IBM's Bioinformatics and Pattern Discovery group. Nucleic Acids Res. 31 (13) (2003)
Tetsuo Shibuya
Constructing the Suffix Tree of a Tree with a Large Alphabet. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (5) (2003)
Tetsuo Shibuya, Igor Kurochkin
Match Chaining Algorithms for cDNA Mapping. WABI (2003)
Hiroshi Kawazoe, Tetsuo Shibuya, Takeshi Tokuyama
Optimal Online Algorithms for an Electronic Commerce Money Distribution System. Algorithmica 33 (3) (2002)
Tetsuo Shibuya
Computing the nxm Shortest Paths Efficiently. ACM J. Exp. Algorithmics 5 (2000)
Tetsuo Shibuya
Generalization of a Suffix Tree for RNA Structural Pattern Matching. SWAT (2000)
Hiroshi Kawazoe, Tetsuo Shibuya, Takeshi Tokuyama
Optimal On-line Algorithms for an Electronic Commerce Money Distribution System. SODA (1999)
Tetsuo Shibuya
Constructing the Suffix Tree of a Tree with a Large Alphabet. ISAAC (1999)
Tetsuo Shibuya
Shortest Paths Efficently. ALENEX (1999)
Tetsuo Shibuya, Hiroshi Imai
New Flexible Approaches for Multiple Sequence Alignment. J. Comput. Biol. 4 (3) (1997)
Tetsuo Shibuya, Hiroshi Imai
New flexible approaches for multiple sequence alignment. RECOMB (1997)
Tsuyoshi Ono, Yoshiaki Kyoda, Tomonari Masada, Kazuyoshi Hayase, Tetsuo Shibuya, Motoki Nakade, Mary Inaba, Hiroshi Imai, Keiko Imai, David Avis
A Package for Triangulations. SCG (1996)
Tetsuo Shibuya, Hiroshi Imai, Shigeki Nishimura, Hiroshi Shimoura, Kenji Tenmoku
Detour Queries in Geographical Databases for Navigation and Related Algorithm Animations. CODAS (1996)