Igor Jurisica

Publication Activity (10 Years)

Years Active: 1992-2023
Publications (10 Years): 23

Top Topics

Simulated Annealing Algorithm

Molecular Interactions

Interactive Data Mining

Top Venues

Nucleic Acids Res.

Publications

Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica
MirDIP 5.2: tissue context annotation and novel microRNA curation. Nucleic Acids Res. 51 (D1) (2023)
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
: fast unique dense region detection and its application to lung cancer. Bioinform. 39 (8) (2023)
Giuseppe Agapito, Chiara Pastrello, Yun Niu, Igor Jurisica
Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture. Briefings Bioinform. 23 (5) (2022)
Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. Nucleic Acids Res. 50 (D1) (2022)
Tomás Tokár, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica
miRAnno - network-based functional microRNA annotation. Bioinform. 38 (2) (2022)
Andreas Holzinger, Matthias Dehmer, Frank Emmert-Streib, Rita Cucchiara, Isabelle Augenstein, Javier Del Ser, Wojciech Samek, Igor Jurisica, Natalia Díaz Rodríguez
Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence. Inf. Fusion 79 (2022)
Giuseppe Agapito, Chiara Pastrello, Igor Jurisica
Comprehensive pathway enrichment analysis workflows: COVID-19 case study. Briefings Bioinform. 22 (2) (2021)
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. Nucleic Acids Res. 48 (Database-Issue) (2020)
Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro
BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways. Bioinform. 36 (15) (2020)
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, K. Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, M. Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020)
Tomás Tokár, Chiara Pastrello, Igor Jurisica
GSOAP: a tool for visualization of gene set over-representation analysis. Bioinform. 36 (9) (2020)
Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. Nucleic Acids Res. 47 (Database-Issue) (2019)
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
SDREGION: Fast Spotting of Changing Communities in Biological Networks. KDD (2018)
M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinform. 19 (1) (2018)
Tomás Tokár, Chiara Pastrello, Andrea E. M. Rossos, Mark Abovsky, Anne-Christin Hauschild, Mike Tsay, Richard Lu, Igor Jurisica
mirDIP 4.1 - integrative database of human microRNA target predictions. Nucleic Acids Res. 46 (Database-Issue) (2018)
Tomás Tokár, Igor Jurisica, Naomi P. Visanji, Christian Veillette
Data-driven medicine: promise and challenges. CASCON (2018)
Serene Wong, Igor Jurisica
Big data analytics: challenges and applications to health care. CASCON (2017)
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. Nucleic Acids Res. 45 (Database-Issue) (2017)
Simon J. Larsen, Frederik G. Alkærsig, Henrik J. Ditzel, Igor Jurisica, Nicolas Alcaraz, Jan Baumbach
A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks. GECCO (2016)
Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica
Integrated interactions database: tissue-specific view of the human and model organism interactomes. Nucleic Acids Res. 44 (Database-Issue) (2016)
Andrea Vargas, Marc Angeli, Chiara Pastrello, Rosanne McQuaid, Han Li, Andrea Jurisicova, Igor Jurisica
Robust quantitative scratch assay. Bioinform. 32 (9) (2016)
Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data. PLoS Comput. Biol. 11 (3) (2015)
Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica
Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinform. 31 (4) (2015)
Andreas Holzinger, Matthias Dehmer, Igor Jurisica
Knowledge Discovery and interactive Data Mining in Bioinformatics - State-of-the-Art, future challenges and research directions. BMC Bioinform. 15 (S-6) (2014)
Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica
Visual Data Mining of Biological Networks: One Size Does Not Fit All. PLoS Comput. Biol. 9 (1) (2013)
Kristen Fortney, Wing Xie, Max Kotlyar, Joshua Griesman, Yulia Kotseruba, Igor Jurisica
. Nucleic Acids Res. 41 (Database-Issue) (2013)
Fatemeh Vafaee, Daniela Rosu, Fiona Broackes-Carter, Igor Jurisica
Novel semantic similarity measure improves an integrative approach to predicting gene functional associations. BMC Syst. Biol. 7 (2013)
Abraham Heifets, Igor Jurisica
Construction of New Medicines via Game Proof Search. AAAI (2012)
Abraham Heifets, Igor Jurisica
SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents. Nucleic Acids Res. 40 (Database-Issue) (2012)
Zohar Yakhini, Igor Jurisica
Cancer Computational Biology. BMC Bioinform. 12 (2011)
Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica
Optimized application of penalized regression methods to diverse genomic data. Bioinform. 27 (24) (2011)
Niloofar Arshadi, Igor Jurisica
Ensembles of case-based reasoning classifiers in high-dimensional biological domains. WIREs Data Mining Knowl. Discov. 1 (2) (2011)
Amira Djebbari, Igor Jurisica
Next-generation, scalable network visualization and analysis. CASCON (2011)
Amira Djebbari, Muhammad Ali, David Otasek, Max Kotlyar, Kristen Fortney, Serene Wong, Anthony Hrvojic, Igor Jurisica
NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs. Internet Math. 7 (4) (2011)
Rui Yan, Paul C. Boutros, Igor Jurisica
A tree-based approach for motif discovery and sequence classification. Bioinform. 27 (15) (2011)
Edward Xia, Igor Jurisica, Julie Waterhouse, Valerie Sloan
Runtime Estimation Using the Case-Based Reasoning Approach for Scheduling in a Grid Environment. ICCBR (2010)
Yun Niu, David Otasek, Igor Jurisica
D. Bioinform. 26 (1) (2010)
Christophe Viau, Michael J. McGuffin, Yves Chiricota, Igor Jurisica
The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional Visualizations for Network Exploration. IEEE Trans. Vis. Comput. Graph. 16 (6) (2010)
Vinay K. Chaudhri, Igor Jurisica, Manolis Koubarakis, Dimitris Plexousakis, Thodoros Topaloglou
The KBMS Project and Beyond. Conceptual Modeling: Foundations and Applications (2009)
Kevin R. Brown, David Otasek, Muhammad Ali, Michael J. McGuffin, Wing Xie, Baiju Devani, Ian Lawson van Toch, Igor Jurisica
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. Bioinform. 25 (24) (2009)
Michael J. McGuffin, Igor Jurisica
Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations. IEEE Trans. Vis. Comput. Graph. 15 (6) (2009)
Yun Niu, Igor Jurisica
Detecting Protein-Protein Interaction Sentences Using a Mixture Model. NLDB (2008)
Rui Yan, Paul C. Boutros, Igor Jurisica, Linda Z. Penn
Comparison of Machine Learning and Pattern Discovery Algorithms for the Prediction of Human Single Nucleotide Polymorphisms. GrC (2007)
Igor Jurisica, Janice I. Glasgow
Introduction: Knowledge Discovery in High-Throughput Biological Domains. Inf. Syst. Frontiers 8 (1) (2006)
Max Kotlyar, Igor Jurisica
Predicting Protein-Protein Interactions by Association Mining. Inf. Syst. Frontiers 8 (1) (2006)
Edward Xia, Igor Jurisica, Julie Waterhouse
CasSim: a top-level-simulator for grid scheduling and applications. CASCON (2006)
Natasa Przulj, Derek G. Corneil, Igor Jurisica
Efficient estimation of graphlet frequency distributions in protein-protein interaction networks. Bioinform. 22 (8) (2006)
Niloofar Arshadi, Igor Jurisica
Feature Selection for Improving Case-Based Classifiers on High-Dimensional Data Sets. FLAIRS Conference (2005)
Niloofar Arshadi, Igor Jurisica
An Ensemble of Case-Based Classifiers for High-Dimensional Biological Domains. ICCBR (2005)
Edward Xia, Igor Jurisica, Julie Waterhouse, Valerie Sloan
Scheduling functional regression tests for IBM DB2 products. CASCON (2005)
Kevin R. Brown, Igor Jurisica
Online Predicted Human Interaction Database. Bioinform. 21 (9) (2005)
Niloofar Arshadi, Igor Jurisica
Data Mining for Case-Based Reasoning in High-Dimensional Biological Domains. IEEE Trans. Knowl. Data Eng. 17 (8) (2005)
Andrew D. King, Natasa Przulj, Igor Jurisica
Protein complex prediction via cost-based clustering. Bioinform. 20 (17) (2004)
Igor Jurisica, John Mylopoulos, Eric S. K. Yu
Ontologies for Knowledge Management: An Information Systems Perspective. Knowl. Inf. Syst. 6 (4) (2004)
Natasa Przulj, Dennis A. Wigle, Igor Jurisica
Functional topology in a network of protein interactions. Bioinform. 20 (3) (2004)
Niloofar Arshadi, Igor Jurisica
Maintaining Case-Based Reasoning Systems: A Machine Learning Approach. ECCBR (2004)
Janice I. Glasgow, Igor Jurisica, Burkhard Rost
AI and Bioinformatics. AI Mag. 25 (1) (2004)
Igor Jurisica, Janice I. Glasgow
Applications of Case-Based Reasoning in Molecular Biology. AI Mag. 25 (1) (2004)
Natasa Przulj, Derek G. Corneil, Igor Jurisica
Modeling interactome: scale-free or geometric?. Bioinform. 20 (18) (2004)
Mujahid Sultan, Dennis A. Wigle, Christian A. Cumbaa, Marlena Maziarz, Janice I. Glasgow, Ming-Sound Tsao, Igor Jurisica
Binary tree-structured vector quantization approach to clustering and visualizing microarray data. ISMB (2002)
Igor Jurisica, Phil Rogers, Janice I. Glasgow, Suzanne Fortier, Joseph R. Luft, Melissa A. Bianca, Robert J. Collins, George T. DeTitta
Image-Feature Extraction for Protein Crystallization: Integrating Image Analysis and Case-Based Reasoning. IAAI (2001)
Igor Jurisica, Patrick Rogers, Janice I. Glasgow, Robert J. Collins, Jennifer R. Wolfley, Joseph R. Luft, George T. DeTitta
Improving Objectivity and Scalability in Protein Crystallization: Integrating Image Analysis With Knowledge Discovery. IEEE Intell. Syst. 16 (6) (2001)
Igor Jurisica, Patrick Rogers, Janice I. Glasgow, Suzanne Fortier, Joseph R. Luft, Jennifer R. Wolfley, Melissa A. Bianca, Daniel R. Weeks, George T. DeTitta
Intelligent decision support for protein crystal growth. IBM Syst. J. 40 (2) (2001)
Igor Jurisica, Janice I. Glasgow
Extending Case-Based Reasoning by Discovering and Using Image Features in IVF. SAC (1) (2000)
Igor Jurisica, Janice I. Glasgow, John Mylopoulos
Incremental Iterative Retrieval and Browsing for Efficient Conversational CBR Systems. Appl. Intell. 12 (3) (2000)
Aris Floratos, Igor Jurisica, Isidore Rigoutsos
Knowledge discovery in biological domains (tutorial AM-3). KDD Tutorial Notes (2000)
Igor Jurisica, Janice I. Glasgow
An Efficient Approach to Iterative Browsing and Retrieval for Case-Based Reasoning. IEA/AIE (Vol. 2) (1998)
Igor Jurisica, Brian A. Nixon
Building Quality into Case-Based Reasoning Systems. CAiSE (1998)
Homayoun Dayani-Fard, Igor Jurisica
Reverse Engineering by Mining Dynamic Repositories. WCRE (1998)
Igor Jurisica, John Mylopoulos, Janice I. Glasgow, Heather Shapiro, Robert F. Casper
Case-based reasoning in IVF: prediction and knowledge mining. Artif. Intell. Medicine 12 (1) (1998)
Igor Jurisica, Janice I. Glasgow
Improving Performance of Case-Based Classification Using Context-Based Relevance. Int. J. Artif. Intell. Tools 6 (4) (1997)
Igor Jurisica
Similarity-based retrieval for diverse bookshelf software repository users. CASCON (1997)
Igor Jurisica, Janice I. Glasgow
Case-Based Classification Using Similarity-Based Retrieval. ICTAI (1996)
Russell Greiner, Igor Jurisica
A Statistical Approach to Solving the EBL Utility Problem. AAAI (1992)