Manuel C. Peitsch

Publication Activity (10 Years)

Years Active: 1997-2019
Publications (10 Years): 6

Top Topics

Unstructured Information

Biological Networks

Lessons Learned

Top Venues

Database J. Biol. Databases Curation

Publications

Florian Martin, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
Systems Toxicology Approach to Unravel Early Indicators of Squamous Cell Carcinoma Rate in Rat Nasal Epithelium Induced by Formaldehyde Exposure. PACBB (2019)
Vincenzo Belcastro, Stephane Cano, Diego Marescotti, Stefano Acali, Carine Poussin, Ignacio Gonzalez-Suarez, Florian Martin, Filipe Bonjour, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
GladiaTOX: GLobal Assessment of Dose-IndicAtor in TOXicology. Bioinform. 35 (20) (2019)
Florian Martin, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks. BMC Bioinform. 20 (1) (2019)
Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Research 6 (2017)
Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track. Database J. Biol. Databases Curation 2016 (2016)
Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation 2016 (2016)
Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2015 (2015)
Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. Bioinform. 31 (4) (2015)
Jean Binder, Stéphanie Boué, Anselmo Di Fabio, Brett Fields, William Hayes, Julia Hoeng, Jennifer Park, Manuel C. Peitsch
Reputation-Based Collaborative Network Biology. Pacific Symposium on Biocomputing (2015)
Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin
A crowd-sourcing approach for the construction of species-specific cell signaling networks. Bioinform. 31 (4) (2015)
Nikolai V. Ivanov, Carine Poussin, Stéphanie Boué, Florian Martin, Alain Sewer, Bjoern Titz, Manuel C. Peitsch, Julia Hoeng
The systems toxicology challenge: how to leverage omics data to predict mechanisms of toxicity? BCB (2015)
Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica
Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinform. 31 (4) (2015)
Stéphanie Boué, Marja Talikka, Jurjen Willem Westra, William Hayes, Anselmo Di Fabio, Jennifer Park, Walter K. Schlage, Alain Sewer, Brett Fields, Sam Ansari, Florian Martin, Emilija Veljkovic, Renée Kenney, Manuel C. Peitsch, Julia Hoeng
Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems. Database J. Biol. Databases Curation 2015 (2015)
Florian Martin, Alain Sewer, Marja Talikka, Yang Xiang, Julia Hoeng, Manuel C. Peitsch
Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models. BMC Bioinform. 15 (2014)
Erfan Younesi, Sam Ansari, Michaela Gündel, Shiva Ahmadi, Chris Coggins, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch
CSEO - the Cigarette Smoke Exposure Ontology. J. Biomed. Semant. 5 (2014)
Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations. BioNLP@ACL (2013)
Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. 29 (22) (2013)
Florian Martin, Ty M. Thomson, Alain Sewer, David A. Drubin, Carole Mathis, Dirk Weisensee, Dexter Pratt, Julia Hoeng, Manuel C. Peitsch
Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks. BMC Syst. Biol. 6 (2012)
Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinform. 28 (9) (2012)
Elyette Martin, Aurélien Monge, Jacques-Antoine Duret, Federico Gualandi, Manuel C. Peitsch, Pavel Pospisil
Building an R&D chemical registration system. J. Cheminformatics 4 (2012)
Walter K. Schlage, Jurjen Willem Westra, Stephan Gebel, Natalie L. Catlett, Carole Mathis, Brian P. Frushour, Arnd Hengstermann, Aaron A. Van Hooser, Carine Poussin, Ben Wong, Michael Lietz, Jennifer Park, David A. Drubin, Emilija Veljkovic, Manuel C. Peitsch, Julia Hoeng, Renee Deehan
A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue. BMC Syst. Biol. 5 (2011)
Jurjen Willem Westra, Walter K. Schlage, Brian P. Frushour, Stephan Gebel, Natalie L. Catlett, Wan-Jiang Han, Sean F. Eddy, Arnd Hengstermann, Andrea L. Matthews, Carole Mathis, Rosemarie B. Lichtner, Carine Poussin, Marja Talikka, Emilija Veljkovic, Aaron A. Van Hooser, Benjamin Wong, Michael J. Maria, Manuel C. Peitsch, Renee Deehan, Julia Hoeng
Construction of a computable cell proliferation network focused on non-diseased lung cells. BMC Syst. Biol. 5 (2011)
Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede
Tandem Mass Spectrometry Protein Identification on a PC Grid. HealthGrid (2007)
Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede
The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned. e-Science (2006)
Manuel C. Peitsch
Grid Computing in Drug Discovery. CCGRID (2006)
Ernest Feytmans, Denis Noble, Manuel C. Peitsch
Genome Size and Numbers of Biological Functions. Trans. Comp. Sys. Biology 1 (2005)
Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch
SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31 (13) (2003)
Manuel C. Peitsch
About the use of protein models. Bioinform. 18 (7) (2002)
Eugenia Migliavacca, Alexei A. Adzhubei, Manuel C. Peitsch
MDB: a database system utilizing automatic construction of modules and STAR-derived universal language. Bioinform. 17 (11) (2001)
Manuel C. Peitsch
Large Scale Protein Modeling and Model Repository. ISMB (1997)