Juliane Fluck

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 28

Top Topics

Causal Relations

Unstructured Information

Biomedical Literature

Top Venues

Database J. Biol. Databases Curation

Publications

Iris Pigeot, Wolfgang Ahrens, Johannes Darms, Juliane Fluck, Martin Golebiewski, Horst K. Hahn, Xiaoming Hu, Timm Intemann, Elisa Kasbohm, Toralf Kirsten, Sebastian Klammt, Sophie Anne Ines Klopfenstein, Bianca Lassen-Schmidt, Manuela Peters, Ulrich Sax, Dagmar Waltemath, Carsten Oliver Schmidt
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19. Datenbank-Spektrum 24 (2) (2024)
Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database J. Biol. Databases Curation 2024 (2024)
Xenia Specka, Daniel Martini, Claus Weiland, Daniel Arend, Senthold Asseng, Franziska Boehm, Til Feike, Juliane Fluck, David Gackstetter, Aida Gonzales-Mellado, Thomas Hartmann, Jan-Henrik Haunert, Florian Hoedt, Carsten Hoffmann, Patrick König, Matthias Lange, Stephan Lesch, Birte Lindstädt, Gunnar Lischeid, Markus Möller, Uwe Rascher, Jochen Christoph Reif, Markus Schmalzl, Matthias Senft, Ulrike Stahl, Nikolai Svoboda, Björn Usadel, Heidi Webber, Frank Ewert
FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung. Inform. Spektrum 46 (1) (2023)
Sonja Schimmler, Reinhard Altenhöner, Lars Bernard, Juliane Fluck, Axel Klinger, Sören Lorenz, Brigitte Mathiak, Bernhard Miller, Raphael Ritz, Thomas Schörner-Sadenius, Alexander Sczyrba, Regine Stein
Base4NFDI - Basic Services for NFDI Creating NFDI-Wide Basic Services in a World of Specific Domains. CoRDI (2023)
Juliane Fluck, Martin Golebiewski, Johannes Darms
Data Publication for Personalised Health Data A New Publication Standard Introduced by NFDI4Health. CoRDI (2023)
Lisa Kühnel, Julian Schneider, Ines Perrar, Tim Adams, Fabian Prasser, Ute Nöthlings, Holger Fröhlich, Juliane Fluck
Synthetic data generation for a longitudinal cohort study - Evaluation, method extension and reproduction of published data analysis results. CoRR (2023)
Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann
Schema.org as a Lightweight Harmonization Approach for NFDI. CoRDI (2023)
Matthias Löbe, Aliaksandra Shutsko, Carsten Oliver Schmidt, Johannes Darms, Sophie Anne Ines Klopfenstein, Carina Nina Vorisek, Xiaoming Hu, Martin Golebiewski, Juliane Fluck
A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench. SWAT4HCLS (2023)
Iris Pigeot, Juliane Fluck, Johannes Darms, Carsten Oliver Schmidt
The NFDI4Health - Task Force COVID-19. CoRDI (2023)
Julia Sasse, Juliane Fluck
An Annotation Workbench for Semantic Annotation of Data Collection Instruments. MIE (2023)
Lisa Kühnel, Juliane Fluck
We are not ready yet: limitations of state-of-the-art disease named entity recognizers. J. Biomed. Semant. 13 (1) (2022)
Lisa Langnickel, Alexander Schulz, Barbara Hammer, Juliane Fluck
BERT WEAVER: Using WEight AVERaging to Enable Lifelong Learning for Transformer-based Models. CoRR (2022)
Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil
Integrative data semantics through a model-enabled data stewardship. Bioinform. 38 (15) (2022)
Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, Irene Neuner, Klaus Mathiak, Martin Hofmann-Apitius, Pegah Sarkheil
Deep Learning-based detection of psychiatric attributes from German mental health records. Int. J. Medical Informatics 161 (2022)
Lisa Langnickel, Johannes Darms, Katharina Heldt, Denise Ducks, Juliane Fluck
: from COVID-19 to long COVID. Database J. Biol. Databases Curation 2022 (2022) (2022)
Johannes Darms, Jörg Henke, Xiaoming Hu, Carsten Oliver Schmidt, Martin Golebiewski, Juliane Fluck
Improving the FAIRness of Health Studies in Germany: The German Central Health Study Hub COVID-19. EFMI-STC (2021)
Lisa Langnickel, Roman Baum, Johannes Darms, Sumit Madan, Juliane Fluck
COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints. MIE (2021)
Carsten Oliver Schmidt, Johannes Darms, Aliaksandra Shutsko, Matthias Löbe, Rajini Nagrani, Bastian Seifert, Birte Lindstädt, Martin Golebiewski, Sofiya Koleva, Theresa Bender, Christian Robert Bauer, Ulrich Sax, Xiaoming Hu, Michael Lieser, Vivien Junker, Sophie Klopfenstein, Atinkut Zeleke, Dagmar Waltemath, Iris Pigeot, Juliane Fluck
Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies. MIE (2021)
Raza-Ur Rahman, Anna-Maria Liebhoff, Vikas Bansal, Maksims Fiosins, Ashish Rajput, Abdul Sattar, Daniel Summer Magruder, Sumit Madan, Ting Sun, Abhivyakti Gautam, Sven Heins, Timur Liwinski, Jörn Bethune, Claudia Trenkwalder, Juliane Fluck, Brit Mollenhauer, Stefan Bonn
SEAweb: the small RNA Expression Atlas web application. Nucleic Acids Res. 48 (Database-Issue) (2020)
Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck
The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track. Database J. Biol. Databases Curation 2019 (2019)
Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
Text Mining and Machine Learning for Precision Medicine. PSB (2019)
Sumit Madan, Maksims Fiosins, Stefan Bonn, Juliane Fluck
A semantic data integration methodology for translational neurodegenerative disease research. SWAT4LS (2018)
Jens Dörpinghaus, Sebastian Schaaf, Juliane Fluck, Marc Jacobs
Document Clustering using a Graph Covering with Pseudostable Sets. FedCSIS (2017)
Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016)
Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. Database J. Biol. Databases Curation 2016 (2016)
Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track. Database J. Biol. Databases Curation 2016 (2016)
Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation 2016 (2016)
Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2015 (2015)
Shweta Bagewadi Kawalia, Tamara Bobic, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger
Detecting miRNA Mentions and Relations in Biomedical Literature. F1000Research 3 (2014)
Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations. BioNLP@ACL (2013)
Tamara Bobic, Juliane Fluck, Martin Hofmann-Apitius
SCAI: Extracting drug-drug interactions using a rich feature vector. SemEval@NAACL-HLT (2013)
Erfan Younesi, Luca Toldo, Bernd Müller, Christoph M. Friedrich, Natalia Novac, Alexander Scheer, Martin Hofmann-Apitius, Juliane Fluck
Mining biomarker information in biomedical literature. BMC Medical Informatics Decis. Mak. 12 (2012)
Harsha Gurulingappa, Abdul Mateen Rajput, Angus Roberts, Juliane Fluck, Martin Hofmann-Apitius, Luca Toldo
Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports. J. Biomed. Informatics 45 (5) (2012)
Mihai Lupu, Jiashu Zhao, Jimmy Huang, Harsha Gurulingappa, Juliane Fluck, Marc Zimmermann, Igor V. Filippov, John Tait
Overview of the TREC 2011 Chemical IR Track. TREC (2011)
Harsha Gurulingappa, Bernd Müller, Martin Hofmann-Apitius, Juliane Fluck
Information Retrieval Framework for Technology Survey in Biomedical and Chemistry Literature. TREC (2011)
Harsha Gurulingappa, Bernd Müller, Martin Hofmann-Apitius, Juliane Fluck
A Semantic Platform for Information Retrieval from E-Health Records. TREC (2011)
Harsha Gurulingappa, Bernd Müller, Roman Klinger, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Christoph M. Friedrich, Juliane Fluck
Prior Art Search in Chemistry Patents Based On Semantic Concepts and Co-Citation Analysis. TREC (2010)
Bernd Müller, Roman Klinger, Harsha Gurulingappa, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, Christoph M. Friedrich
Abstracts versus Full Texts and Patents: A Quantitative Analysis of Biomedical Entities. IRFC (2010)
Harsha Gurulingappa, Corinna Kolárik, Martin Hofmann-Apitius, Juliane Fluck
Concept-Based Semi-Automatic Classification of Drugs. J. Chem. Inf. Model. 49 (8) (2009)
Harsha Gurulingappa, Bernd Müller, Roman Klinger, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, Christoph M. Friedrich
Patent Retrieval in Chemistry Based on Semantically Tagged Named Entities. TREC (2009)
Roman Klinger, Corinna Kolárik, Juliane Fluck, Martin Hofmann-Apitius, Christoph M. Friedrich
Detection of IUPAC and IUPAC-like chemical names. ISMB (2008)
Corinna Kolárik, Martin Hofmann-Apitius, Marc Zimmermann, Juliane Fluck
Identification of new drug classification terms in textual resources. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Roman Klinger, Christoph M. Friedrich, Heinz-Theodor Mevissen, Juliane Fluck, Martin Hofmann-Apitius, Laura Inés Furlong, Ferran Sanz
Identifying gene-Specific Variations in Biomedical Text. J. Bioinform. Comput. Biol. 5 (6) (2007)
Christoph M. Friedrich, Thomas Revillion, Martin Hofmann, Juliane Fluck
Biomedical and Chemical Named Entity Recognition with Conditional Random Fields: The Advantage of Dictionary Features. SMBM (2006)
Thomas Karopka, Juliane Fluck, Heinz-Theodor Mevissen, Änne Glass
The Autoimmune Disease Database: a dynamically compiled literature-derived database. BMC Bioinform. 7 (2006)
Sophia Ananiadou, Juliane Fluck
Proceedings of the Second International Symposium for Semantic Mining in Biomedicine. BMC Bioinform. 7 (S-3) (2006)
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck
ProMiner: rule-based protein and gene entity recognition. BMC Bioinform. 6 (S-1) (2005)
Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
Microarrays: How Many Do You Need? J. Comput. Biol. 10 (3/4) (2003)
Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Ralf Zimmer
Playing Biology's Name Game: Identifying Protein Names in Scientific Text. Pacific Symposium on Biocomputing (2003)
Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
Microarrays: how many do you need? RECOMB (2002)