Björn Usadel

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 5

Top Topics

Error Correction

Database Schema

Semantically Heterogeneous

Top Venues

Inform. Spektrum

Publications

Xenia Specka, Daniel Martini, Claus Weiland, Daniel Arend, Senthold Asseng, Franziska Boehm, Til Feike, Juliane Fluck, David Gackstetter, Aida Gonzales-Mellado, Thomas Hartmann, Jan-Henrik Haunert, Florian Hoedt, Carsten Hoffmann, Patrick König, Matthias Lange, Stephan Lesch, Birte Lindstädt, Gunnar Lischeid, Markus Möller, Uwe Rascher, Jochen Christoph Reif, Markus Schmalzl, Matthias Senft, Ulrike Stahl, Nikolai Svoboda, Björn Usadel, Heidi Webber, Frank Ewert
FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung. Inform. Spektrum 46 (1) (2023)
Xiao-Ran Zhou, Sebastian Beier, Dominik Brilhaus, Cristina Martins Rodrigues, Timo Mühlhaus, Dirk von Suchodoletz, Richard M. Twyman, Björn Usadel, Angela Kranz
DataPLAN: A Web-Based Data Management Plan Generator for the Plant Sciences. Data 8 (11) (2023)
Kathryn Dumschott, Hannah Dörpholz, Marie-Angélique Laporte, Dominik Brilhaus, Andrea Schrader, Björn Usadel, Steffen Neumann, Elizabeth Arnaud, Angela Kranz
Ontologies for increasing the FAIRness of plant research data. CoRR (2023)
Daniel Wibberg, Bérénice Batut, Peter Belmann, Jochen Blom, Frank Oliver Glöckner, Björn A. Grüning, Nils Hoffmann, Nils Kleinbölting, René Rahn, Maja Rey, Uwe Scholz, Malvika Sharan, Andreas Tauch, Ulrike Trojahn, Björn Usadel, Oliver Kohlbacher
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR. F1000Research 8 (2019)
Marie E. Bolger, Borjana Arsova, Björn Usadel
Plant genome and transcriptome annotations: from misconceptions to simple solutions. Briefings Bioinform. 19 (3) (2018)
Anahita Nafissi, Fabio Fiorani, Björn Usadel
Mapping a database schema to the structure of an existing ontology. ICBO (2015)
Markus Joppich, Dirk Schmidl, Anthony M. Bolger, Torsten W. Kuhlen, Björn Usadel
PAGANtec: OpenMP Parallel Error Correction for Next-Generation Sequencing Data. IWOMP (2015)
Ziva Ramsak, Spela Baebler, Ana Rotter, Matej Korbar, Igor Mozetic, Björn Usadel, Kristina Gruden
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Res. 42 (Database-Issue) (2014)
Anthony M. Bolger, Marc Lohse, Björn Usadel
Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinform. 30 (15) (2014)
Jing-Woei Li, Dan M. Bolser, Magnus Manske, Federico Manuel Giorgi, Nikolay Vyahhi, Björn Usadel, Bernardo J. Clavijo, Ting-Fung Chan, Nathalie Wong, Daniel R. Zerbino, Maria Victoria Schneider
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings Bioinform. 14 (5) (2013)
Marc Lohse, Anthony M. Bolger, Axel Nagel, Alisdair R. Fernie, John E. Lunn, Mark Stitt, Björn Usadel
: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Jing-Woei Li, Keith Robison, Marcel Martin, Andreas Sjödin, Björn Usadel, Matthew Young, Eric C. Olivares, Dan M. Bolser
The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Res. 40 (Database-Issue) (2012)
Axel Nagel, Marc Lohse, Anthony M. Bolger, Mark Stitt, Björn Usadel
Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways. Human Vision and Electronic Imaging (2011)
Federico M. Giorgi, Anthony M. Bolger, Marc Lohse, Björn Usadel
Algorithm-driven Artifacts in median polish summarization of Microarray data. BMC Bioinform. 11 (2010)
Martin Gebser, Torsten Schaub, Sven Thiele, Björn Usadel, Philippe Veber
Detecting Inconsistencies in Large Biological Networks with Answer Set Programming. ICLP (2008)
Marc Strickert, Nese Sreenivasulu, Björn Usadel, Udo Seiffert
Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue. BMC Bioinform. 8 (2007)
Björn Usadel, Axel Nagel, Dirk Steinhauser, Yves Gibon, Oliver E. Bläsing, Henning Redestig, Nese Sreenivasulu, Leonard Krall, Matthew A. Hannah, Fabien Poree, Alisdair R. Fernie, Mark Stitt
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinform. 7 (2006)
Joachim Kopka, Nicolas Schauer, Stephan Krueger, Claudia Birkemeyer, Björn Usadel, Eveline Bergmüller, Peter Dörmann, Wolfram Weckwerth, Yves Gibon, Mark Stitt, Lothar Willmitzer, Alisdair R. Fernie, Dirk Steinhauser
GMD@CSB.DB: the Golm Metabolome Database. Bioinform. 21 (8) (2005)
Dirk Steinhauser, Björn Usadel, Alexander Lüdemann, Oliver Thimm, Joachim Kopka
CSB.DB: a comprehensive systems-biology database. Bioinform. 20 (18) (2004)