Ting-Fung Chan

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 7

Top Topics

Temporal Resolution

Iterative Optimization

Top Venues

Briefings Bioinform.

Publications

Chen Li, Ting-Fung Chan, Can Yang, Zhixiang Lin
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics. Bioinform. 39 (10) (2023)
Wenkai Han, Yuqi Cheng, Jiayang Chen, Huawen Zhong, Zhihang Hu, Siyuan Chen, Licheng Zong, Liang Hong, Ting-Fung Chan, Irwin King, Xin Gao, Yu Li
Self-supervised contrastive learning for integrative single cell RNA-seq data analysis. Briefings Bioinform. 23 (5) (2022)
Andrew Ching-Yuet To, David Ho-Ting Chu, Angela Ruoning Wang, Frances Cheuk-Yau Li, Alan Wai-On Chiu, Daisy Yuwei Gao, Chung Hang Jonathan Choi, Siu-Kai Kong, Ting-Fung Chan, King-Ming Chan, Kevin Y. Yip
A comprehensive web tool for toehold switch design. Bioinform. 34 (16) (2018)
Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan
OMTools: a software package for visualizing and processing optical mapping data. Bioinform. 33 (18) (2017)
Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan
OMBlast: alignment tool for optical mapping using a seed-and-extend approach. Bioinform. 33 (3) (2017)
Menglu Li, Siu-Ming Yiu, Ting-Fung Chan, Ernest T. Lam
An iterative algorithm for de novo optical map assembly. BIBM (2017)
Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip, Ting-Fung Chan, Siu-Ming Yiu
Towards a More Accurate Error Model for BioNano Optical Maps. ISBRA (2016)
Raymond Wan, Ting-Fung Chan, Jannifer Hiu-Kwan Man
Query Modification through External Sources to Support Clinical Decisions. TREC (2014)
Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30 (8) (2014)
Yao Xin, Benben Liu, Biao Min, Will X. Y. Li, Ray C. C. Cheung, Anthony S. Fong, Ting-Fung Chan
Parallel architecture for DNA sequence inexact matching with Burrows-Wheeler Transform. Microelectron. J. 44 (8) (2013)
Jing-Woei Li, Dan M. Bolser, Magnus Manske, Federico Manuel Giorgi, Nikolay Vyahhi, Björn Usadel, Bernardo J. Clavijo, Ting-Fung Chan, Nathalie Wong, Daniel R. Zerbino, Maria Victoria Schneider
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings Bioinform. 14 (5) (2013)
Jing-Woei Li, Raymond Wan, Chi-Shing Yu, Ngai Na Co, Nathalie Wong, Ting-Fung Chan
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution. Bioinform. 29 (5) (2013)
Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. BMC Bioinform. 12 (S-5) (2011)
Shao-Ke Lou, Bing Ni, Leung-Yau Lo, Stephen Kwok-Wing Tsui, Ting-Fung Chan, Kwong-Sak Leung
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. Bioinform. 27 (3) (2011)
Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. BIBM (2010)