An iterative algorithm for de novo optical map assembly.
Menglu LiSiu-Ming YiuTing-Fung ChanErnest T. LamPublished in: BIBM (2017)
Keyphrases
- improved algorithm
- preprocessing
- times faster
- learning algorithm
- objective function
- optimal solution
- k means
- recognition algorithm
- cost function
- np hard
- detection algorithm
- particle swarm optimization
- similarity measure
- expectation maximization
- simulated annealing
- worst case
- experimental evaluation
- dynamic programming
- significant improvement
- high accuracy
- probabilistic model
- theoretical analysis
- ant colony optimization
- matching algorithm
- path planning
- search space
- iterative optimization