ProMiner: rule-based protein and gene entity recognition.
Daniel HanischKatrin FundelHeinz-Theodor MevissenRalf ZimmerJuliane FluckPublished in: BMC Bioinform. (2005)
Keyphrases
- sequence alignment
- homo sapiens
- cellular processes
- gene prediction
- protein protein interaction networks
- regulatory networks
- biological entities
- gene expression
- interaction networks
- protein interaction
- genomic sequences
- drosophila melanogaster
- signaling pathways
- dna binding
- saccharomyces cerevisiae
- protein structure
- gene expression data
- protein protein interactions
- protein sequences
- gene ontology terms
- nucleotide sequences
- expert systems
- cis regulatory
- microarray
- dna sequences
- biological knowledge
- biologically meaningful
- amino acids
- genome scale
- gene regulation
- gene networks
- protein function
- gene ontology
- escherichia coli
- biological data
- binding sites
- biological processes
- microarray data
- high throughput
- experimental conditions
- drug discovery
- sequence data
- protein structure prediction
- comparative genomics
- gene function
- biomedical literature
- systems biology
- gene regulatory networks
- protein interaction networks
- genome sequences
- computational biology
- transcription factors
- gene expression profiles