Marja Talikka

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 3

Top Topics

Connected Subgraphs

Gene Expression Data Sets

Biological Networks

Lessons Learned

Top Venues

Database J. Biol. Databases Curation

Publications

Marja Talikka, Johanna Naukkarinen, Katriina Mielonen, Harri Eskelinen
Guided process to enhance undergraduate engineering students' thesis work. FIE (2022)
Florian Martin, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
Systems Toxicology Approach to Unravel Early Indicators of Squamous Cell Carcinoma Rate in Rat Nasal Epithelium Induced by Formaldehyde Exposure. PACBB (2019)
Florian Martin, Sylvain Gubian, Marja Talikka, Julia Hoeng, Manuel C. Peitsch
NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks. BMC Bioinform. 20 (1) (2019)
Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2015 (2015)
Marja Talikka, Hanna Varri, Harri Eskelinen, Heli Rimppi
Challenges in finding a connection between IL education and research problem formulation. FIE (2015)
Stéphanie Boué, Marja Talikka, Jurjen Willem Westra, William Hayes, Anselmo Di Fabio, Jennifer Park, Walter K. Schlage, Alain Sewer, Brett Fields, Sam Ansari, Florian Martin, Emilija Veljkovic, Renée Kenney, Manuel C. Peitsch, Julia Hoeng
Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems. Database J. Biol. Databases Curation 2015 (2015)
Florian Martin, Alain Sewer, Marja Talikka, Yang Xiang, Julia Hoeng, Manuel C. Peitsch
Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models. BMC Bioinform. 15 (2014)
Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. 29 (22) (2013)
Jurjen Willem Westra, Walter K. Schlage, Brian P. Frushour, Stephan Gebel, Natalie L. Catlett, Wan-Jiang Han, Sean F. Eddy, Arnd Hengstermann, Andrea L. Matthews, Carole Mathis, Rosemarie B. Lichtner, Carine Poussin, Marja Talikka, Emilija Veljkovic, Aaron A. Van Hooser, Benjamin Wong, Michael J. Maria, Manuel C. Peitsch, Renee Deehan, Julia Hoeng
Construction of a computable cell proliferation network focused on non-diseased lung cells. BMC Syst. Biol. 5 (2011)