Torsten Schwede

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 10

Top Topics

Quality Estimation

Top Venues

Nucleic Acids Res.

Publications

Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Eric Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner
LIGATE - LIgand Generator and portable drug discovery platform AT Exascale. CF (Companion) (2024)
Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone. Bioinform. 40 (1) (2024)
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Eric Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CF (2023)
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Luigi Crisci, Biagio Cosenza, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermuhle, Eric Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CoRR (2023)
Gabriel Studer, Gerardo Tauriello, Stefan Bienert, Marco Biasini, Niklaus Johner, Torsten Schwede
ProMod3 - A versatile homology modelling toolbox. PLoS Comput. Biol. 17 (1) (2021)
Gabriel Studer, Christine Rempfer, Andrew Waterhouse, Rafal Gumienny, Juergen Haas, Torsten Schwede
QMEANDisCo - distance constraints applied on model quality estimation. Bioinform. 36 (8) (2020)
Diana Coman Schmid, Katrin Crameri, Sabine Oesterle, Bernd Rinn, Thierry Sengstag, Heinz Stockinger, Leila T. Alexander, Jonathan Barda, Christian Bolliger, Urban Borstnik, Gerhard Bräunlich, Olivier Byrde, Jérôme Dauvillier, Robin Engler, Pablo Escobar Lopez, Volker Flegel, Martin Fox, Sofia Georgakopoulou, Jani Heikkinen, Martin Jacquot, Nicolas Kowenski, Guillermo Losilla, Sergio Maffioletti, Jorge Molina, Diego Moreno, Allen Neeser, Michal Okoniewski, Warren Paulus, Kevin Sayers, Torsten Schwede, Jaroslaw Surkont, Richard Wartenburger, Thomas Wüst
SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data. MIE (2020)
Gabriel Studer, Christine Rempfer, Andrew Waterhouse, Rafal Gumienny, Jürgen Haas, Torsten Schwede
QMEANDisCo - distance constraints applied on model quality estimation. Bioinform. 36 (6) (2020)
Andrew Waterhouse, Martino Bertoni, Stefan Bienert, Gabriel Studer, Gerardo Tauriello, Rafal Gumienny, Florian T. Heer, Tjaart A. P. de Beer, Christine Rempfer, Lorenza Bordoli, Rosalba Lepore, Torsten Schwede
SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Stefan Bienert, Andrew Waterhouse, Tjaart A. P. de Beer, Gerardo Tauriello, Gabriel Studer, Lorenza Bordoli, Torsten Schwede
The SWISS-MODEL Repository - new features and functionality. Nucleic Acids Res. 45 (Database-Issue) (2017)
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Gabriel Studer, Marco Biasini, Torsten Schwede
Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane). Bioinform. 30 (17) (2014)
Marco Biasini, Stefan Bienert, Andrew Waterhouse, Konstantin Arnold, Gabriel Studer, Tobias Schmidt, Florian Kiefer, Tiziano Gallo Cassarino, Martino Bertoni, Lorenza Bordoli, Torsten Schwede
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Valerio Mariani, Marco Biasini, Alessandro Barbato, Torsten Schwede
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinform. 29 (21) (2013)
Juergen Haas, Steven Roth, Konstantin Arnold, Florian Kiefer, Tobias Schmidt, Lorenza Bordoli, Torsten Schwede
The Protein Model Portal - a comprehensive resource for protein structure and model information. Database J. Biol. Databases Curation 2013 (2013)
Torsten Schwede, Dagmar Iber
European Conference on Computational Biology. Bioinform. 28 (18) (2012)
Alessandro Barbato, Pascal Benkert, Torsten Schwede, Anna Tramontano, Jan Kosinski
Improving your target-template alignment with MODalign. Bioinform. 28 (7) (2012)
Pascal Benkert, Marco Biasini, Torsten Schwede
Toward the estimation of the absolute quality of individual protein structure models. Bioinform. 27 (3) (2011)
Jürgen Haas, Torsten Schwede
Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing. ERCIM News 2010 (82) (2010)
Marco Biasini, Valerio Mariani, Jürgen Haas, Stefan Scheuber, Andreas D. Schenk, Torsten Schwede, Ansgar Philippsen
OpenStructure: a flexible software framework for computational structural biology. Bioinform. 26 (20) (2010)
Helen M. Berman, John D. Westbrook, Margaret J. Gabanyi, Wendy Tao, Raship Shah, Andrei Kouranov, Torsten Schwede, Konstantin Arnold, Florian Kiefer, Lorenza Bordoli, Jürgen Kopp, Michael Podvinec, Paul D. Adams, Lester G. Carter, Wladek Minor, Rajesh Nair, Joshua La Baer
The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res. 37 (Database-Issue) (2009)
Florian Kiefer, Konstantin Arnold, Michael Künzli, Lorenza Bordoli, Torsten Schwede
The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 37 (Database-Issue) (2009)
Pascal Benkert, Michael Künzli, Torsten Schwede
QMEAN server for protein model quality estimation. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Dominique Zosso, Konstantin Arnold, Torsten Schwede, Michael Podvinec
SWISS-TANDEM: A Web-Based Workspace for MS/MS Protein Identification on PC Grids. CBMS (2007)
Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede
Tandem Mass Spectrometry Protein Identification on a PC Grid. HealthGrid (2007)
Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede
The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned. e-Science (2006)
Konstantin Arnold, Lorenza Bordoli, Jürgen Kopp, Torsten Schwede
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinform. 22 (2) (2006)
Jürgen Kopp, Torsten Schwede
The SWISS-MODEL Repository: new features and functionalities. Nucleic Acids Res. 34 (Database-Issue) (2006)
Jürgen Kopp, Torsten Schwede
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res. 32 (Database-Issue) (2004)
Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch
SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31 (13) (2003)