Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone.
Lorenzo PantoliniGabriel StuderJoana PereiraJanani DurairajGerardo TaurielloTorsten SchwedePublished in: Bioinform. (2024)
Keyphrases
- language model
- sequence alignment
- dynamic programming
- structural similarities
- language modeling
- document retrieval
- retrieval model
- information retrieval
- query expansion
- n gram
- probabilistic model
- statistical language models
- speech recognition
- smoothing methods
- databases
- language modelling
- language models for information retrieval
- text categorization
- protein sequences
- data analysis
- relevance model
- document ranking