Sven Bergmann

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 8

Top Topics

Gene Expression

Summary Statistics

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Daniel Krefl, Alessandro Brandulas Cammarata, Sven Bergmann
PascalX: a Python library for GWAS gene and pathway enrichment tests. Bioinform. 39 (5) (2023)
Daniel Krefl, Sven Bergmann
Cross-GWAS coherence test at the gene and pathway level. PLoS Comput. Biol. 18 (9) (2022)
Micha Hersch, Adriano Biasini, Ana C. Marques, Sven Bergmann
Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment. BMC Bioinform. 23 (1) (2022)
Mattia Tomasoni, Sergio Gómez, Jake Crawford, Weijia Zhang, Sarvenaz Choobdar, Daniel Marbach, Sven Bergmann
MONET: a toolbox integrating top-performing methods for network modularization. Bioinform. 36 (12) (2020)
Payam Emami Khoonsari, Pablo Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35 (19) (2019)
David Lamparter, Daniel Marbach, Rico Rueedi, Sven Bergmann, Zoltán Kutalik
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility. PLoS Comput. Biol. 13 (1) (2017)
Rico Rueedi, Roger Mallol, Johannes Raffler, David Lamparter, Nele Friedrich, Peter Vollenweider, Gérard Waeber, Gabi Kastenmüller, Zoltán Kutalik, Sven Bergmann
Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy. PLoS Comput. Biol. 13 (12) (2017)
David Lamparter, Daniel Marbach, Rico Rueedi, Zoltán Kutalik, Sven Bergmann
Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics. PLoS Comput. Biol. 12 (1) (2016)
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Micha Hersch, Aude Billard, Sven Bergmann
Iterative Estimation of Rigid-Body Transformations - Application to Robust Object Tracking and Iterative Closest Point. J. Math. Imaging Vis. 43 (1) (2012)
Barbara Piasecka, Marc Robinson-Rechavi, Sven Bergmann
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human. Bioinform. 28 (14) (2012)
Aitana Morton de Lachapelle, Sven Bergmann
A New Scaling Measure Quantifies the Conservation of Proportions of Gene Expression Profiles in Developing Organic Shapes. SHAPES (2011)
Alex Alon, Sven Bergmann
Connecting Points by Smooth Connection Functions Defines Shapes in the Smoothest Possible Way. SHAPES (2011)
Charlotte N. Henrichsen, Gábor Csárdi, Marie-Thérèse Zabot, Carmela Fusco, Sven Bergmann, Giuseppe Merla, Alexandre Reymond
Using Transcription Modules to Identify Expression Clusters Perturbed in Williams-Beuren Syndrome. PLoS Comput. Biol. 7 (1) (2011)
Gábor Csárdi, Zoltán Kutalik, Sven Bergmann
Modular analysis of gene expression data with R. Bioinform. 26 (10) (2010)
Thierry Schüpbach, Ioannis Xenarios, Sven Bergmann, Karen Kapur
FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinform. 26 (11) (2010)
Andreas Lüscher, Gábor Csárdi, Aitana Morton de Lachapelle, Zoltán Kutalik, Bastian Peter, Sven Bergmann
ExpressionView - an interactive viewer for modules identified in gene expression data. Bioinform. 26 (16) (2010)
Robin Liechti, Gábor Csárdi, Sven Bergmann, Frédéric Schütz, Thierry Sengstag, Sylvia F. Boj, Joan-Marc Servitja, Jorge Ferrer, Leentje Van Lommel, Frans Schuit, Sonia Klinger, Bernard Thorens, Najib Naamane, Decio L. Eizirik, Lorella Marselli, Marco Bugliani, Piero Marchetti, Stephanie Lucas, Cecilia Holm, C. Victor Jongeneel, Ioannis Xenarios
EuroDia: a beta-cell gene expression resource. Database J. Biol. Databases Curation 2010 (2010)
Stefan Breuer, Sven Bergmann, Ralf Dragon, Sebastian Möller
Set-up of a Unit-Selection Synthesis with a Prominent Voice. LREC (2006)
Jan Ihmels, Sven Bergmann
Challenges and prospects in the analysis of large-scale gene expression data. Briefings Bioinform. 5 (4) (2004)
Jan Ihmels, Sven Bergmann, Naama Barkai
Defining transcription modules using large-scale gene expression data. Bioinform. 20 (13) (2004)