Jakub Beránek

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 25

Top Topics

Rapid Prototyping

Reconfigurable Hardware

Top Venues

Publications

Christian Pilato, Subhadeep Banik, Jakub Beránek, Fabien Brocheton, Jerónimo Castrillón, Riccardo Cevasco, Radim Cmar, Serena Curzel, Fabrizio Ferrandi, Karl F. A. Friebel, Antonella Galizia, Matteo Grasso, Paulo Silva, Jan Martinovic, Gianluca Palermo, Michele Paolino, Andrea Parodi, Antonio Parodi, Fabio Pintus, Raphael Polig, David Poulet, Francesco Regazzoni, Burkhard Ringlein, Roberto Rocco, Katerina Slaninová, Tom Slooff, Stephanie Soldavini, Felix Suchert, Mattia Tibaldi, Beat Weiss, Christoph Hagleitner
A System Development Kit for Big Data Applications on FPGA-based Clusters: The EVEREST Approach. CoRR (2024)
Christian Pilato, Subhadeep Banik, Jakub Beránek, Fabien Brocheton, Jerónimo Castrillón, Riccardo Cevasco, Radim Cmar, Serena Curzel, Fabrizio Ferrandi, Karl F. A. Friebel, Antonella Galizia, Matteo Grasso, Paulo Silva, Jan Martinovic, Gianluca Palermo, Michele Paolino, Andrea Parodi, Antonio Parodi, Fabio Pintus, Raphael Polig, David Poulet, Francesco Regazzoni, Burkhard Ringlein, Roberto Rocco, Katerina Slaninová, Tom Slooff, Stephanie Soldavini, Felix Suchert, Mattia Tibaldi, Beat Weiss, Christoph Hagleitner
A System Development Kit for Big Data Applications on FPGA-based Clusters: The EVEREST Approach. DATE (2024)
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Eric Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner
LIGATE - LIgand Generator and portable drug discovery platform AT Exascale. CF (Companion) (2024)
Jakub Beránek, Ada Böhm, Gianluca Palermo, Jan Martinovic, Branislav Jansik
HyperQueue: Efficient and ergonomic task graphs on HPC clusters. SoftwareX 27 (2024)
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Eric Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CF (2023)
Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. 39 (8) (2023)
Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Luigi Crisci, Biagio Cosenza, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermuhle, Eric Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CoRR (2023)
Jakub Beránek, Stanislav Böhm, Vojtech Cima
Analysis of workflow schedulers in simulated distributed environments. J. Supercomput. 78 (13) (2022)
Jakub Beránek, Stanislav Böhm, Vojtech Cima
Analysis of Workflow Schedulers in Simulated Distributed Environments. CoRR (2022)
Maciej Besta, Raghavendra Kanakagiri, Grzegorz Kwasniewski, Rachata Ausavarungnirun, Jakub Beránek, Konstantinos Kanellopoulos, Kacper Janda, Zur Vonarburg-Shmaria, Lukas Gianinazzi, Ioana Stefan, Juan Gómez-Luna, Marcin Copik, Lukas Kapp-Schwoerer, Salvatore Di Girolamo, Marek Konieczny, Onur Mutlu, Torsten Hoefler
SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems. CoRR (2021)
Maciej Besta, Zur Vonarburg-Shmaria, Yannick Schaffner, Leonardo Schwarz, Grzegorz Kwasniewski, Lukas Gianinazzi, Jakub Beránek, Kacper Janda, Tobias Holenstein, Sebastian Leisinger, Peter Tatkowski, Esref Özdemir, Adrian Balla, Marcin Copik, Philipp Lindenberger, Pavel Kalvoda, Marek Konieczny, Onur Mutlu, Torsten Hoefler
GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra. CoRR (2021)
Salvatore Di Girolamo, Andreas Kurth, Alexandru Calotoiu, Thomas Benz, Timo Schneider, Jakub Beránek, Luca Benini, Torsten Hoefler
A RISC-V in-network accelerator for flexible high-performance low-power packet processing. ISCA (2021)
Maciej Besta, Raghavendra Kanakagiri, Grzegorz Kwasniewski, Rachata Ausavarungnirun, Jakub Beránek, Konstantinos Kanellopoulos, Kacper Janda, Zur Vonarburg-Shmaria, Lukas Gianinazzi, Ioana Stefan, Juan Gómez-Luna, Jakub Golinowski, Marcin Copik, Lukas Kapp-Schwoerer, Salvatore Di Girolamo, Nils Blach, Marek Konieczny, Onur Mutlu, Torsten Hoefler
SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems. MICRO (2021)
Maciej Besta, Zur Vonarburg-Shmaria, Yannick Schaffner, Leonardo Schwarz, Grzegorz Kwasniewski, Lukas Gianinazzi, Jakub Beránek, Kacper Janda, Tobias Holenstein, Sebastian Leisinger, Peter Tatkowski, Esref Özdemir, Adrian Balla, Marcin Copik, Philipp Lindenberger, Marek Konieczny, Onur Mutlu, Torsten Hoefler
GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra. Proc. VLDB Endow. 14 (11) (2021)
Salvatore Di Girolamo, Andreas Kurth, Alexandru Calotoiu, Thomas Benz, Timo Schneider, Jakub Beránek, Luca Benini, Torsten Hoefler
PsPIN: A high-performance low-power architecture for flexible in-network compute. CoRR (2020)
Stanislav Böhm, Jakub Beránek
Runtime vs Scheduler: Analyzing Dask's Overheads. WORKS@SC (2020)
Stanislav Böhm, Jakub Beránek
Runtime vs Scheduler: Analyzing Dask's Overheads. CoRR (2020)
Salvatore Di Girolamo, Konstantin Taranov, Andreas Kurth, Michael Schaffner, Timo Schneider, Jakub Beránek, Maciej Besta, Luca Benini, Duncan Roweth, Torsten Hoefler
Network-Accelerated Non-Contiguous Memory Transfers. CoRR (2019)
Tiziano De Matteis, Johannes de Fine Licht, Jakub Beránek, Torsten Hoefler
Streaming message interface: high-performance distributed memory programming on reconfigurable hardware. SC (2019)
Stanislav Böhm, Jakub Beránek, Martin Surkovský
Haydi: Rapid Prototyping and Combinatorial Objects. CoRR (2019)
Martin Golasowski, Jakub Beránek, Martin Surkovský, Lukás Rapant, Daniela Szturcová, Jan Martinovic, Katerina Slaninová
Alternative Paths Reordering Using Probabilistic Time-Dependent Routing. NBiS (2019)
Tiziano De Matteis, Johannes de Fine Licht, Jakub Beránek, Torsten Hoefler
Streaming Message Interface: High-Performance Distributed Memory Programming on Reconfigurable Hardware. CoRR (2019)
Salvatore Di Girolamo, Konstantin Taranov, Andreas Kurth, Michael Schaffner, Timo Schneider, Jakub Beránek, Maciej Besta, Luca Benini, Duncan Roweth, Torsten Hoefler
Network-accelerated non-contiguous memory transfers. SC (2019)
Jan Martinovic, Martin Golasowski, Katerina Slaninová, Jakub Beránek, Martin Surkovský, Lukás Rapant, Daniela Szturcová, Radim Cmar
A Distributed Environment for Traffic Navigation Systems. CISIS (2019)
Stanislav Böhm, Jakub Beránek, Martin Surkovský
Haydi: Rapid Prototyping and Combinatorial Objects. FoIKS (2018)