Jiri Filipovic

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 21

Top Topics

Gpu Implementation

Kernel Regression

Historical Data

Top Venues

Future Gener. Comput. Syst.

Publications

Floris-Jan Willemsen, Richard Schoonhoven, Jiri Filipovic, Jacob O. Tørring, Rob van Nieuwpoort, Ben van Werkhoven
A methodology for comparing optimization algorithms for auto-tuning. Future Gener. Comput. Syst. 159 (2024)
Miroslav Demek, Jiri Filipovic
Towards Dynamic Autotuning of SpMV in CUSP Library. IPDPS (Workshops) (2024)
Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jiri Filipovic, Anne C. Elster
Towards a Benchmarking Suite for Kernel Tuners. CoRR (2023)
Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. 39 (8) (2023)
Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jiri Filipovic, Anne C. Elster
Towards a Benchmarking Suite for Kernel Tuners. IPDPS Workshops (2023)
David Strelák, David Myska, Filip Petrovic, Jan Polák, Jaroslav Olha, Jiri Filipovic
Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes. Computing 105 (11) (2023)
Filip Petrovic, Jiri Filipovic
Kernel Tuning Toolkit. SoftwareX 22 (2023)
Petra Nemcová, Jana Hozzová, Jiri Filipovic
Improving ligand transport trajectory within flexible receptor in CaverDock. SAC (2022)
Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic
Using hardware performance counters to speed up autotuning convergence on GPUs. J. Parallel Distributed Comput. 160 (2022)
Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic
Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures. CoRR (2021)
Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic
Using hardware performance counters to speed up autotuning convergence on GPUs. CoRR (2021)
Jaroslav Olha, Jana Hozzová, Jan Fousek, Jiri Filipovic
Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps. Concurr. Comput. Pract. Exp. 32 (21) (2020)
Filip Petrovic, David Strelák, Jana Hozzová, Jaroslav Olha, Richard Trembecký, Siegfried Benkner, Jiri Filipovic
A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit. Future Gener. Comput. Syst. 108 (2020)
Jiri Filipovic, Ondrej Vávra, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Ludek Matyska, Jirí Damborský
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (5) (2020)
Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Jan Stourac, Ludek Matyska, Jirí Damborský
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinform. 35 (23) (2019)
David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. Int. J. High Perform. Comput. Appl. 33 (5) (2019)
Filip Petrovic, David Strelák, Jana Hozzová, Jaroslav Olha, Richard Trembecký, Siegfried Benkner, Jiri Filipovic
A Benchmark Set of Highly-efficient CUDA and OpenCL Kernels and its Dynamic Autotuning with Kernel Tuning Toolkit. CoRR (2019)
Jan Stourac, Ondrej Vavra, Piia Kokkonen, Jiri Filipovic, Gaspar R. P. Pinto, Jan Brezovsky, Jirí Damborský, David Bednar
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Jaroslav Olha, Jana Hozzová, Jan Fousek, Jiri Filipovic
Exploiting Historical Data: Pruning Autotuning Spaces and Estimating the Number of Tuning Steps. Euro-Par Workshops (2019)
David Strelák, Jiri Filipovic
Performance analysis and autotuning setup of the cuFFT library. ANDARE@PACT (2018)
Jiri Filipovic, Filip Petrovic, Siegfried Benkner
Autotuning of OpenCL Kernels with Global Optimizations. ANDARE@PACT (2017)
Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska
Optimizing CUDA code by kernel fusion: application on BLAS. J. Supercomput. 71 (10) (2015)
Jiri Filipovic, Jan Plhak, David Strelák
Acceleration of dRMSD calculation and efficient usage of GPU caches. HPCS (2015)
Jiri Filipovic, Siegfried Benkner
OpenCL Kernel Fusion for GPU, Xeon Phi and CPU. SBAC-PAD (2015)
Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska
Optimizing CUDA Code By Kernel Fusion---Application on BLAS CoRR (2013)
Jan Fousek, Jiri Filipovic, Matus Madzin
Automatic fusions of CUDA-GPU kernels for parallel map. SIGARCH Comput. Archit. News 39 (4) (2011)
Igor Peterlík, Jiri Filipovic
Distributed Construction of Configuration Spaces for Real-Time Haptic Deformation Modeling. IEEE Trans. Ind. Electron. 58 (8) (2011)
Jan Fousek, Tomas Golembiovsky, Jiri Filipovic, Igor Peterlík
Haptic Rendering Based on RBF Approximation from Dynamically Updated Data. MEMICS (2010)
Jiri Filipovic, Igor Peterlík, Ludek Matyska
On-line precomputation algorithm for real-time haptic interaction with non-linear deformable bodies. WHC (2009)
Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet
Job Provenance - Insight into Very Large Provenance Datasets. IPAW (2008)
Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska
Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services. PDP (2008)