Ales Krenek

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 9

Top Topics

Data Management

Similarity Search

Calculation Method

Top Venues

J. Cheminformatics

Comput. Sci. Rev.

Publications

Tomás Svoboda, Tomás Racek, Josef Handl, Jozef Sabo, Adrián Rosinec, Lukasz Opiola, Wojciech Jesionek, Milan Esner, Markéta Pernisová, Natallia Madzia Valasevich, Ales Krenek, Radka Svobodová Vareková
Onedata4Sci: Life science data management solution based on Onedata. CoRR (2023)
Adam Hájek, Michal Starý, Filip Jozefov, Helge Hecht, Elliott James Price, Ales Krenek
De-novo Identification of Small Molecules from Their GC-EI-MS Spectra. CoRR (2023)
Ondrej Schindler, Karel Berka, Alessio Cantara, Ales Krenek, Dominik Tichý, Tomás Racek, Radka Svobodová Vareková
αCharges: partial atomic charges for AlphaFold structures in high quality. Nucleic Acids Res. 51 (W1) (2023)
Amanda Calatrava, Hernán Asorey, Ján Astalos, Alberto Azevedo, Francesco Benincasa, Ignacio Blanquer, Martin Bobák, Francisco Vilar Brasileiro, Laia Codó, Laura del Cano, Borja Esteban, Meritxell Ferret, Josef Handl, Tobias Kerzenmacher, Valentin Kozlov, Ales Krenek, Ricardo Martins, Manuel Pavesio, Antonio Juan Rubio-Montero, Juan Sánchez-Ferrero
A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. Comput. Sci. Rev. 49 (2023)
Dalibor Trapl, Martin Krupicka, Vladimír Visnovský, Jana Hozzová, Jaroslav Olha, Ales Krenek, Vojtech Spiwok
Property Map Collective Variable as a Useful Tool for a Force Field Correction. J. Chem. Inf. Model. 62 (3) (2022)
Amanda Calatrava, Hernán Asorey, Ján Astalos, Alberto Azevedo, Francesco Benincasa, Ignacio Blanquer, Martin Bobak, Francisco V. Brasileiro, Laia Codó, Laura del Cano, Borja Esteban, Meritxell Ferret, Josef Handl, Tobias Kerzenmacher, Valentin Kozlov, Ales Krenek, Ricardo Martins, Manuel Pavesio, Antonio J. Rubio-Montero, Juan Sánchez-Ferrero
A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. CoRR (2022)
Vladimir Mic, Tomás Racek, Ales Krenek, Pavel Zezula
Similarity Search for an Extreme Application: Experience and Implementation. SISAP (2021)
Jana Pazúriková, Jaroslav Olha, Ales Krenek, Vojtech Spiwok
Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations. CoRR (2018)
Tomás Racek, Jana Pazúriková, Radka Svobodová Vareková, Stanislav Geidl, Ales Krenek, Francesco L. Falginella, Vladimír Horský, Václav Hejret, Jaroslav Koca
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges. J. Cheminformatics 8 (1) (2016)
Stanislav Geidl, Tomás Bouchal, Tomás Racek, Radka Svobodová Vareková, Václav Hejret, Ales Krenek, Ruben Abagyan, Jaroslav Koca
High-quality and universal empirical atomic charges for chemoinformatics applications. J. Cheminformatics 7 (2015)
Tomás Bouchal, Radka Svobodová Vareková, Tomás Racek, Crina-Maria Ionescu, Stanislav Geidl, Ales Krenek, Jaroslav Koca
Empirical charges for chemoinformatics applications. J. Cheminformatics 6 (S-1) (2014)
Jakub Stepán, Petr Kulhánek, Milan Lenco, Zora Strelcová, Ales Krenek, Jaroslav Koca
Nemesis - a molecular modeling package. J. Cheminformatics 5 (S-1) (2013)
Tomas Golembiovsky, Ales Krenek
Compression of Vector Field Changing in Time. MEMICS (2010)
Ales Krenek, Jirí Sitera, Ludek Matyska, Frantisek Dvorák, Milos Mulac, Miroslav Ruda, Zdenek Salvet
gLite Job Provenance - a job-centric view. Concurr. Comput. Pract. Exp. 20 (5) (2008)
Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao
Special Issue: The First Provenance Challenge. Concurr. Comput. Pract. Exp. 20 (5) (2008)
Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet
Job Provenance - Insight into Very Large Provenance Datasets. IPAW (2008)
Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska
Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services. PDP (2008)
Miroslav Ruda, Ales Krenek, Milos Mulac, Jan Pospisil, Zdenek Sustr
A uniform job monitoring service in multiple job universes. GMW@HPDC (2007)
Frantisek Dvorák, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jan Pospisil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu
gLite Job Provenance. IPAW (2006)
Jirí Denemark, Michal Jankowski, Ales Krenek, Ludek Matyska, Norbert Meyer, Miroslav Ruda, Pawel Wolniewicz
Best Practices of User Account Management with Virtual Organization Based Access to Grid. PPAM (2005)
Igor Peterlík, Ales Krenek
Haptically Driven Travelling through Conformational Space. WHC (2005)
Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Alessandro Maraschini, Fabrizio Pacini, Massimo Sottilaro, Annalisa Terracina, D. Colling, Francesco Giacomini, Elisabetta Ronchieri, Alessio Gianelle, Mirco Mazzucato, Rosario Peluso, Massimo Sgaravatto, Andrea Guarise, Rosario M. Piro, Albert Werbrouck, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, J. Skrabal, Michal Vocu, M. Mezzadri, Francesco Prelz, Salvatore Monforte, Marco Pappalardo
The DataGrid Workload Management System: Challenges and Results. J. Grid Comput. 2 (4) (2004)
Ales Krenek
Haptic Rendering of Complex Force Fields. IPT/EGVE (2003)
Giuseppe Avellino, S. Barale, Stefano Beco, Barbara Cantalupo, D. Colling, Francesco Giacomini, Alessio Gianelle, Andrea Guarise, Ales Krenek, Daniel Kouril, Alessandro Maraschini, Ludek Matyska, M. Mezzadri, Salvatore Monforte, Milos Mulac, Fabrizio Pacini, Marco Pappalardo, R. Peluso, Jirí Pospísil, Francesco Prelz, Elisabetta Ronchieri, Miroslav Ruda, Livio Salconi, Zdenek Salvet, Massimo Sgaravatto, Jirí Sitera, Annalisa Terracina, Michal Vocu, Albert Werbrouck
The EU DataGrid Workload Management System: towards the second major release CoRR (2003)
Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Fabrizio Pacini, Annalisa Terracina, Alessandro Maraschini, D. Colling, Salvatore Monforte, Marco Pappalardo, Livio Salconi, Francesco Giacomini, Elisabetta Ronchieri, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu, M. Mezzadri, Francesco Prelz, Alessio Gianelle, R. Peluso, Massimo Sgaravatto, S. Barale, Andrea Guarise, Albert Werbrouck
The first deployment of workload management services on the EU DataGrid Testbed: feedback on design and implementation CoRR (2003)
Ales Krenek, Igor Peterlík, Ludek Matyska
Building 3D State Spaces of Virtual Environments with a TDS-Based Algorithm. PVM/MPI (2003)
Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell
Early Experiences with the EGrid Testbed. CCGRID (2001)
Ales Krenek
Handling Cycles in Conformational Behaviour Visualization. WSCG (2000)