Timothy M. McPhillips

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 13

Top Topics

Microarray Data

Top Venues

Publications

George Alter, Jack Gager, Pascal Heus, Carson Hunter, Sanda Ionescu, Jeremy Iverson, H. V. Jagadish, Bertram Ludäscher, Jared Lyle, Timothy M. McPhillips, Alexander Mueller, Sigve Nordgaard, Ørnulf Risnes, Dan J. Smith, Jie Song, Thomas Thelen
Detailed Provenance Metadata from Statistical Analysis Software: TaPP Applications Track. TaPP (2021)
Timothy M. McPhillips, Thomas Thelen, Craig Willis, Kacper Kowalik, Matthew B. Jones, Bertram Ludäscher
CPR-A Comprehensible Provenance Record for Verification Workflows in Whole Tale. IPAW (2021)
Nikolaus Nova Parulian, Timothy M. McPhillips, Bertram Ludäscher
A Model and System for Querying Provenance from Data Cleaning Workflows. IPAW (2021)
Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis
Toward Enabling Reproducibility for Data-Intensive Research using the Whole Tale Platform. CoRR (2020)
Timothy M. McPhillips, Craig Willis, Michael R. Gryk, Santiago Núñez Corrales, Bertram Ludäscher
Reproducibility by Other Means: Transparent Research Objects. eScience (2019)
Kyle Chard, Thomas Thelen, Matthew J. Turk, Craig Willis, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor
Application of BagIt-Serialized Research Object Bundles for Packaging and Re-Execution of Computational Analyses. eScience (2019)
Timothy M. McPhillips, Lan Li, Nikolaus Nova Parulian, Bertram Ludäscher
Modeling Provenance and Understanding Reproducibility for OpenRefine Data Cleaning Workflows. TaPP (2019)
Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis
Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform. PARCO (2019)
Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Validation and Inference of Schema-Level Workflow Data-Dependency Annotations. IPAW (2018)
Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Validation and Inference of Schema-Level Workflow Data-Dependency Annotations. CoRR (2018)
Qian Zhang, Yang Cao, Qiwen Wang, Duc Vu, Priyaa Thavasimani, Timothy M. McPhillips, Paolo Missier, Peter Slaughter, Christopher Jones, Matthew B. Jones, Bertram Ludäscher
Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance. Int. J. Digit. Curation 12 (2) (2017)
Yang Cao, Christopher Jones, Víctor Cuevas-Vicenttín, Matthew B. Jones, Bertram Ludäscher, Timothy M. McPhillips, Paolo Missier, Christopher R. Schwalm, Peter Slaughter, David Vieglais, Lauren Walker, Yaxing Wei
DataONE: A Data Federation with Provenance Support. IPAW (2016)
João Felipe Pimentel, Saumen C. Dey, Timothy M. McPhillips, Khalid Belhajjame, David Koop, Leonardo Murta, Vanessa Braganholo, Bertram Ludäscher
Yin & Yang: Demonstrating Complementary Provenance from noWorkflow & YesWorkflow. IPAW (2016)
Timothy M. McPhillips, Shawn Bowers, Khalid Belhajjame, Bertram Ludäscher
Retrospective Provenance Without a Runtime Provenance Recorder. TaPP (2015)
Timothy M. McPhillips, Tianhong Song, Tyler Kolisnik, Steve Aulenbach, Khalid Belhajjame, Kyle Bocinsky, Yang Cao, Fernando Chirigati, Saumen C. Dey, Juliana Freire, Deborah N. Huntzinger, Christopher Jones, David Koop, Paolo Missier, Mark Schildhauer, Christopher R. Schwalm, Yaxing Wei, James Cheney, Mark Bieda, Bertram Ludäscher
YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts. CoRR (2015)
Paolo Missier, Bertram Ludäscher, Saumen C. Dey, Michael Wang, Timothy M. McPhillips, Shawn Bowers, Michael Agun, Ilkay Altintas
Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository. Int. J. Digit. Curation 7 (1) (2012)
Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Declarative Rules for Inferring Fine-Grained Data Provenance from Scientific Workflow Execution Traces. IPAW (2012)
Thomas Stropp, Timothy M. McPhillips, Bertram Ludäscher, Mark Bieda
Workflows for microarray data processing in the Kepler environment. BMC Bioinform. 13 (2012)
Sven Köhler, Sean Riddle, Daniel Zinn, Timothy M. McPhillips, Bertram Ludäscher
Improving Workflow Fault Tolerance through Provenance-Based Recovery. SSDBM (2011)
Lei Dou, Daniel Zinn, Timothy M. McPhillips, Sven Köhler, Sean Riddle, Shawn Bowers, Bertram Ludäscher
Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler. ICDE (2011)
Daniel Zinn, Quinn J. Hart, Timothy M. McPhillips, Bertram Ludäscher, Yogesh Simmhan, Michail Giakkoupis, Viktor K. Prasanna
Towards Reliable, Performant Workflows for Streaming-Applications on Cloud Platforms. CCGRID (2011)
Amber L. Hartman, Sean Riddle, Timothy M. McPhillips, Bertram Ludäscher, Jonathan A. Eisen
WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences. BMC Bioinform. 11 (2010)
Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Efficient provenance storage over nested data collections. EDBT (2009)
Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Exploring Scientific Workflow Provenance Using Hybrid Queries over Nested Data and Lineage Graphs. SSDBM (2009)
Timothy M. McPhillips, Shawn Bowers, Daniel Zinn, Bertram Ludäscher
Scientific workflow design for mere mortals. Future Gener. Comput. Syst. 25 (5) (2009)
Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
X-CSR: Dataflow Optimization for Distributed XML Process Pipelines. ICDE (2009)
Bertram Ludäscher, Mathias Weske, Timothy M. McPhillips, Shawn Bowers
Scientific Workflows: Business as Usual? BPM (2009)
Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Scientific workflow design with data assembly lines. SC-WORKS (2009)
Shawn Bowers, Timothy M. McPhillips, Sean Riddle, Manish Kumar Anand, Bertram Ludäscher
Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life. IPAW (2008)
Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao
Special Issue: The First Provenance Challenge. Concurr. Comput. Pract. Exp. 20 (5) (2008)
Anne H. H. Ngu, Shawn Bowers, Nicholas Haasch, Timothy M. McPhillips, Terence Critchlow
Flexible Scientific Workflow Modeling Using Frames, Templates, and Dynamic Embedding. SSDBM (2008)
Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher
Provenance in collection-oriented scientific workflows. Concurr. Comput. Pract. Exp. 20 (5) (2008)
Bertram Ludäscher, Norbert Podhorszki, Ilkay Altintas, Shawn Bowers, Timothy M. McPhillips
From computation models to models of provenance: the RWS approach. Concurr. Comput. Pract. Exp. 20 (5) (2008)
Shawn Bowers, Timothy M. McPhillips, Martin Wu, Bertram Ludäscher
Project Histories: Managing Data Provenance Across Collection-Oriented Scientific Workflow Runs. DILS (2007)
Susan B. Davidson, Sarah Cohen Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire
Provenance in Scientific Workflow Systems. IEEE Data Eng. Bull. 30 (4) (2007)
Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher, Shirley Cohen, Susan B. Davidson
A Model for User-Oriented Data Provenance in Pipelined Scientific Workflows. IPAW (2006)
Timothy M. McPhillips, Shawn Bowers, Bertram Ludäscher
Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data. DILS (2006)
Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips, Norbert Podhorszki
Scientific Workflows: More e-Science Mileage from Cyberinfrastructure. e-Science (2006)
Timothy M. McPhillips, Shawn Bowers
An approach for pipelining nested collections in scientific workflows. SIGMOD Rec. 34 (3) (2005)