Jonathan A. Eisen

Publication Activity (10 Years)

Years Active: 1994-2015
Publications (10 Years): 1

Top Topics

Protein Families

Accurate Estimation

Genomic Sequences

Top Venues

PLoS Comput. Biol.

Publications

Stephen Nayfach, Patrick H. Bradley, Stacia K. Wyman, Timothy J. Laurent, Alexander G. Williams, Jonathan A. Eisen, Katherine S. Pollard, Thomas J. Sharpton
Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. PLoS Comput. Biol. 11 (11) (2015)
Steven W. Kembel, Martin Wu, Jonathan A. Eisen, Jessica L. Green
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance. PLoS Comput. Biol. 8 (10) (2012)
Morgan G. I. Langille, Matthew R. Laird, William W. L. Hsiao, Terry A. Chiu, Jonathan A. Eisen, Fiona S. L. Brinkman
MicrobeDB: a locally maintainable database of microbial genomic sequences. Bioinform. 28 (14) (2012)
Thomas J. Sharpton, Guillaume Jospin, Dongying Wu, Morgan G. I. Langille, Katherine S. Pollard, Jonathan A. Eisen
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. BMC Bioinform. 13 (2012)
Aaron E. Darling, Andrew J. Tritt, Jonathan A. Eisen, Marc T. Facciotti
Mauve Assembly Metrics. Bioinform. 27 (19) (2011)
Thomas J. Sharpton, Samantha J. Riesenfeld, Steven W. Kembel, Joshua Ladau, James P. O'Dwyer, Jessica L. Green, Jonathan A. Eisen, Katherine S. Pollard
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data. PLoS Comput. Biol. 7 (1) (2011)
Amber L. Hartman, Sean Riddle, Timothy M. McPhillips, Bertram Ludäscher, Jonathan A. Eisen
WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences. BMC Bioinform. 11 (2010)
Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads. RECOMB (2008)
Daniel H. Haft, Brendan J. Loftus, Delwood L. Richardson, Fan Yang, Jonathan A. Eisen, Ian T. Paulsen, Owen White
TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res. 29 (1) (2001)
Jonathan A. Eisen, Maria-Ines Benito, Virginia Walbot
Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences. Nucleic Acids Res. 22 (13) (1994)