Aaron E. Darling

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 2

Top Topics

Protein Folding

Lessons Learned

Top Venues

PLoS Comput. Biol.

Publications

Matthew Macaulay, Aaron E. Darling, Mathieu Fourment
Fidelity of hyperbolic space for Bayesian phylogenetic inference. PLoS Comput. Biol. 19 (4) (2023)
Matthew Z. DeMaere, Aaron E. Darling
qc3C: Reference-free quality control for Hi-C sequencing data. PLoS Comput. Biol. 17 (10) (2021)
David Coil, Guillaume Jospin, Aaron E. Darling
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinform. 31 (4) (2015)
Michael Liu, Aaron E. Darling
Metagenomic Chromosome Conformation Capture (3C): techniques, applications, and challenges. F1000Research 4 (2015)
Birte Kehr, Knut Reinert, Aaron E. Darling
Hidden Breakpoints in Genome Alignments. WABI (2012)
Oliver Attie, Aaron E. Darling, Sophia Yancopoulos
The rise and fall of breakpoint reuse depending on genome resolution. BMC Bioinform. 12 (S-9) (2011)
Aaron E. Darling, Andrew J. Tritt, Jonathan A. Eisen, Marc T. Facciotti
Mauve Assembly Metrics. Bioinform. 27 (19) (2011)
Andrés Esteban-Marcos, Aaron E. Darling, Mark A. Ragan
Seevolution: visualizing chromosome evolution. Bioinform. 25 (7) (2009)
Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha
A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (2) (2009)
Anna I. Rissman, Bob Mau, Bryan S. Biehl, Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna
Reordering contigs of draft genomes using the Mauve Aligner. Bioinform. 25 (16) (2009)
Todd J. Treangen, Aaron E. Darling, Mark A. Ragan, Xavier Messeguer
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. ISBRA (2008)
Jeremy D. Glasner, Guy Plunkett III, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Thomas Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Res. 36 (Database-Issue) (2008)
Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. Nucleic Acids Res. 34 (Database-Issue) (2006)
Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna
Procrastination Leads to Efficient Filtration for Local Multiple Alignment. WABI (2006)
Aaron E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna
GRIL: genome rearrangement and inversion locator. Bioinform. 20 (1) (2004)
Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna
Multiple Alignment of Rearranged Genomes. CSB (2004)
Bob Mau, Aaron E. Darling, Nicole T. Perna
Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes. Comparative Genomics (2004)
Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron E. Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael K. Gilson, Bryan S. Biehl, Frederick R. Blattner, Nicole T. Perna
ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 (1) (2003)