A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.
Todd J. TreangenAaron E. DarlingGuillaume AchazMark A. RaganXavier MesseguerEduardo P. C. RochaPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2009)
Keyphrases
- multiple alignment
- protein sequences
- sequence analysis
- multiple sequence alignment
- computational biology
- search algorithm
- optimal solution
- mining sequential patterns
- sequential pattern mining
- sequence alignment
- biological sequences
- simulated annealing
- sequence data
- secondary structure
- protein structure
- beam search
- graph theoretic
- sequence databases
- tabu search
- data mining
- search strategies
- data structure