Carlos Oscar Sánchez Sorzano

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 15

Top Topics

Graduate Students

Automatic Selection

Signal Processing

Electron Microscopy

Top Venues

IEEE J. Sel. Top. Signal Process.

Nucleic Acids Res.

Publications

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50 (D1) (2022)
José Ramón Macías, Rubén Sánchez García, Pablo Conesa, Erney Ramírez-Aportela, Marta Martínez, Carlos Wert-Carvajal, Alberto M. Parra-Perez, Joan Segura Mora, Sam Horrell, Andrea Thorn, Carlos Oscar Sánchez Sorzano, José María Carazo
3DBionotes COVID-19 edition. Bioinform. 37 (22) (2021)
Marta Martínez, A. Jiménez-Moreno, David Maluenda, Erney Ramírez-Aportela, Roberto Melero, A. Cuervo, Pablo Conesa, Laura del Cano, Y. C. Fonseca, Rubén Sánchez García, David Strelák, J. J. Conesa, E. Fernández-Giménez, F. de Isidro, Carlos Oscar Sánchez Sorzano, José María Carazo, Roberto Marabini
Integration of Cryo-EM Model Building Software in Scipion. J. Chem. Inf. Model. 60 (5) (2020)
Erney Ramírez-Aportela, Jose Luis Vilas, Alisa Glukhova, Roberto Melero, Pablo Conesa, Marta Martínez, David Maluenda, Javier Mota, Amaya Jiménez, Javier Vargas, Roberto Marabini, Patrick M. Sexton, José María Carazo, Carlos Oscar Sánchez Sorzano
Automatic local resolution-based sharpening of cryo-EM maps. Bioinform. 36 (3) (2020)
Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. Bioinform. 35 (18) (2019)
Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
Validation of electron microscopy initial models via small angle X-ray scattering curves. Bioinform. 35 (14) (2019)
David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. Int. J. High Perform. Comput. Appl. 33 (5) (2019)
Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. Bioinform. 35 (3) (2019)
Denis Fortun, Paul Guichard, Virginie Hamel, Carlos Oscar Sánchez Sorzano, Niccolo Banterle, Pierre Gonczy, Michael Unser
Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy. IEEE Trans. Medical Imaging 37 (5) (2018)
Carlos Oscar Sánchez Sorzano, José María Carazo
Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view. CoRR (2017)
Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. Bioinform. 33 (22) (2017)
Ana Iriarte, Roberto Marabini, Samuel Matej, Carlos Oscar Sánchez Sorzano, Robert M. Lewitt
System models for PET statistical iterative reconstruction: A review. Comput. Medical Imaging Graph. 48 (2016)
Charles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. IEEE J. Sel. Top. Signal Process. 10 (1) (2016)
Slavica Jonic, Carlos Oscar Sánchez Sorzano
Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation. IEEE J. Sel. Top. Signal Process. 10 (1) (2016)
Charles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser
Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. IEEE J. Sel. Top. Signal Process. 10 (1) (2016)
Ana Iriarte, Gabriel Caffarena, Mariano Lopez-Fernandez, Rodrigo García-Carmona, Abraham Otero, Carlos Oscar Sánchez Sorzano, Roberto Marabini
Iterative reconstruction for pet scanners with continuous scintillators. EMBC (2015)
Kin-Man Lam, Carlos Oscar Sánchez Sorzano, Zhilan Zhang, Patrizio Campisi
Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 1 [sp Education]. IEEE Signal Process. Mag. 32 (4) (2015)
Javier Setoain, Mònica Franch, Marta Martínez, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, Annette Bakker, Eduardo Gonzalez-Couto, Juan Elvira, Alberto D. Pascual-Montano
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo
Using neighborhood cohesiveness to infer interactions between protein domains. Bioinform. 31 (15) (2015)
Carlos Oscar Sánchez Sorzano, Anik Khan, Forsad Al Hossain, Tawab Ullash, Abu Raihan, Mohammed Ariful Haque, Kai-Wen Liang, Yen-Chen Wu, Guan-Lin Chao, Kuan-Hao Huang, Shao-Hua Sun, Ming-Jen Yang, Po-Wen Hsiao, Ti-Fen Pan, Yi-Ching Chiu, Wei-Chih Tu, Shao-Yi Chien, Emroz Khan, Shiekh Zia Uddin, Mukhlasur Rhaman Tanvir, Md. Kamrul Hasan, Jesús Cuenca Alba
Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 2 [sp Education]. IEEE Signal Process. Mag. 32 (5) (2015)
Qiyu Jin, Carlos Oscar Sánchez Sorzano, Isabelle Callebaut, Florence Tama, Slavica Jonic
Elastic image registration to fully explore macromolecular dynamics by electron microscopy. ICIP (2014)
Carlos Oscar Sánchez Sorzano, Javier Vargas, José Miguel de la Rosa-Trevín, Airen Zaldívar-Peraza, Joaquín Otón, Vahid Abrishami, Ignacio Foche, Roberto Marabini, Gabriel Caffarena, José María Carazo
Outlier detection for single particle analysis in Electron Microscopy. IWBBIO (2014)
Eduardo Garcia de La Cueva, Miguel Mateo de La Puente, Alessandro Deideri, Ana Iriarte, Carlos Oscar Sánchez Sorzano, Gabriel Caffarena
2D and 3D Alignment for Electron Microscopy via Graphics Processing Units. IWBBIO (2014)
Carlos Oscar Sánchez Sorzano, Javier Vargas, Gabriel Caffarena-Fernández, Ana Iriarte
Comparing scientific performance among equals. Scientometrics 101 (3) (2014)
Javier Vargas, Ana-Lucia Álvarez-Cabrera, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
Efficient initial volume determination from electron microscopy images of single particles. Bioinform. 30 (20) (2014)
Carlos Oscar Sánchez Sorzano, Javier Vargas, Joaquín Otón, Vahid Abrishami, José Miguel de la Rosa-Trevín, S. del Riego, A. Fernandez-Alderete, C. Martinez-Rey, Roberto Marabini, José María Carazo
An image processing approach to the simulation of electron microscopy volumes of atomic structures. ICIP (2014)
Carlos Oscar Sánchez Sorzano, Javier Vargas, Alberto Domingo Pascual-Montano
A survey of dimensionality reduction techniques. CoRR (2014)
Vahid Abrishami, Airen Zaldívar-Peraza, José Miguel de la Rosa-Trevín, Javier Vargas, Joaquín Otón, Roberto Marabini, Yoel Shkolnisky, José María Carazo, Carlos Oscar Sánchez Sorzano
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinform. 29 (19) (2013)
Rubén Nogales-Cadenas, Slavica Jonic, Florence Tama, A. A. Arteni, Daniel Tabas-Madrid, Miguel Vázquez, Alberto D. Pascual-Montano, Carlos Oscar Sánchez Sorzano
3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Carlos Oscar Sánchez Sorzano, Joaquín Otón, Jesús Cuenca Alba, Airen Zaldívar-Perez, Gabriel Caffarena, Javier Sanchez-Jimenez, Cédric Messaoudi, Sergio Marco, Roberto Marabini, José María Carazo
Image processing for Cellular tomography using soft X-rays. ISBI (2012)
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography. Bioinform. 26 (21) (2010)
Carlos Oscar Sánchez Sorzano, Cédric Messaoudi, Matthias Eibauer, Jose-Roman Bilbao-Castro, Reiner Hegerl, S. Nickell, Sergio Marco, José María Carazo
Marker-free image registration of electron tomography tilt-series. BMC Bioinform. 10 (2009)
Laura Fernandez-de-Manuel, María J. Ledesma-Carbayo, Julian Atienza-Herrero, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos
Flexible image registration for the identification of best fitted protein models in 3D-EM maps. ISBI (2008)
Carlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo
Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognit. 41 (2) (2008)
Cédric Messaoudi, Thomas Boudier, Carlos Oscar Sánchez Sorzano, Sergio Marco
TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy. BMC Bioinform. 8 (2007)
Carlos Oscar Sánchez Sorzano, Elena Ortiz, Mariló López, Javier Rodrigo
Improved Bayesian image denoising based on wavelets with applications to electron microscopy. Pattern Recognit. 39 (6) (2006)
Carlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo
Optimization problems in electron microscopy of single particles. Ann. Oper. Res. 148 (1) (2006)
Ignacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. CVAMIA (2006)
Bartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos
Molecular image registration using mutual information and differential evolution optimization. ISBI (2006)
José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo
Image processing and 3-D reconstruction in electron microscopy. IEEE Signal Process. Mag. 23 (3) (2006)
Sjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo
Grid Computing in 3D-EM Image Processing Using Xmipp. CBMS (2005)
Carlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction. Pattern Recognit. 38 (12) (2005)
Carlos Oscar Sánchez Sorzano, Philippe Thévenaz, Michael Unser
Elastic registration of biological images using vector-spline regularization. IEEE Trans. Biomed. Eng. 52 (4) (2005)
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
Phan3D: design of biological phantoms in 3D electron microscopy. Bioinform. 20 (17) (2004)
Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman
3-D reconstruction of 2-D crystals in real space. IEEE Trans. Image Process. 13 (4) (2004)
Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej
3D reconstruction of 2D crystals from projections in real space. ISBI (2002)
Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo
Volumetric constraints in 3D tomography applied to electron microscopy. ISBI (2002)
Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). Softw. Pract. Exp. 32 (9) (2002)