Jean-Christophe Olivo-Marin

ORCID

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 48

Top Venues

ISBI

ICIP

CoRR

IEEE Trans. Image Process.

Publications

Antoine Habis, Roy Rosman Nathanson, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images. CoRR (2024)
Antoine Habis, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Deep ContourFlow: Advancing Active Contours with Deep Learning. CoRR (2024)
Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin
Ensemble Multiple Instance Learning for Bladder Cancer Diagnosis. ISBI (2023)
Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin
Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty. IEEE Trans. Pattern Anal. Mach. Intell. 45 (5) (2023)
Raphael Reme, Victor Piriou, Alison Hanson, Rafael Yuste, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache
Tracking Intermittent Particles with Self-Learned Visual Features. ISBI (2023)
Selin Aviyente, Alejandro F. Frangi, Erik Meijering, Arrate Muñoz-Barrutia, Michael Liebling, Dimitri Van De Ville, Jean-Christophe Olivo-Marin, Jelena Kovacevic, Michael Unser
From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process. Mag. 40 (4) (2023)
Diana Mandache, Emilie Benoit á la Guillaume, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Cross-Modal Contrastive Learning for Robust Representation of the Extracellular Matrix in Static and Dynamic Full-Field OCT Images. ISBI (2023)
Yekta Kesenci, Aleix Boquet-Pujadas, Michael Unser, Jean-Christophe Olivo-Marin
Probing Intracellular Elasticity with Minimal-Hessian Registration. ISBI (2023)
Erwan Dereure, Christophe Kervazo, Johanne Seguin, Anikitos Garofalakis, Nathalie Mignet, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging. ISBI (2023)
Suvadip Mukherjee, Rituparna Sarkar, Maria Manich, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
Domain Adapted Multitask Learning for Segmenting Amoeboid Cells in Microscopy. IEEE Trans. Medical Imaging 42 (1) (2023)
Suvadip Mukherjee, Vannary Meas-Yedid, Marc Bokobza, Thibault Lagache, Alexandre Corthay, Jean-Christophe Olivo-Marin
Spatial Analysis For Histopathology: A Statistical Approach. ISBI (2022)
Ximu Deng, Anuj Srivastava, Rituparna Sarkar, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
Characterizing Cell Shape Distributions Using k-Mode Kernel Mixtures. ICPR (2022)
Diana Mandache, Emilie Benoit á la Guillaume, Y. Badachi, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
The Lifecycle of a Neural Network in the Wild: A Multiple Instance Learning Study on Cancer Detection from Breast Biopsies Imaged with Novel Technique. ICIP (2022)
Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin
Cell Instance Segmentation Using Z-Stacks in Digital Cytology. ISBI (2022)
Yekta Kesenci, Aleix Boquet-Pujadas, Emma van Bodegraven, Sandrine Étienne-Manneville, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
PDE-Constrained Optimization for Nuclear Mechanics. ICIP (2022)
Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava
Characterizing Cell Populations Using Statistical Shape Modes. ISBI (2022)
Antoine Habis, Vannary Meas-Yedid, Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Elsa D. Angelini
Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images. ICIP (2022)
Samuel Kubler, Jean-Christophe Olivo-Marin, Thibault Lagache
Statistical Coupling Between time Point-Processes. ISBI (2022)
Rituparna Sarkar, Daniel Darby, Héloise Foucambert, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin
Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart. ISBI (2021)
D. Mandache, Emilie Benoit á la Guillaume, M.-C. Mathieu, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying. ISBI (2021)
Sammit Jain, Suvadip Mukherjee, Lydia Danglot, Jean-Christophe Olivo-Marin
Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction. ISBI (2021)
Suvadip Mukherjee, Rituparna Sarkar, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells. ISBI (2021)
D. Mandache, Emilie Benoit á la Guillaume, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies. ISBI (2021)
Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin, Nancy Guillen
Bioimage Analysis and Cell Motility. Patterns 2 (1) (2021)
Suvadip Mukherjee, Thibault Lagache, Jean-Christophe Olivo-Marin
Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index. IEEE Trans. Image Process. 30 (2021)
Samuel Kubler, Suvadip Mukherjee, Jean-Christophe Olivo-Marin, Thibault Lagache
A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity. ISBI (2021)
Suvadip Mukherjee, Catalina Gonzalez-Gomez, Lydia Danglot, Thibault Lagache, Jean-Christophe Olivo-Marin
Generalizing the Statistical Analysis of Objects' Spatial Coupling in Bioimaging. IEEE Signal Process. Lett. 27 (2020)
Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava
Modeling Shape Dynamics During Cell Motility in Microscopy Videos. ICIP (2020)
Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. ICPR (2020)
Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin
Extended Depth of Field Preserving Color Fidelity For Automated Digital Cytology. ICPR (2020)
Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. CoRR (2020)
Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Laurent Wendling, Vannary Meas-Yedid
Vector-Based Morphological Operations on Polygons Using Straight Skeletons for Digital Pathology. DGCI (2019)
Aleix Boquet-Pujadas, Cecilia Grimaldi, Erez Raz, Jean-Christophe Olivo-Marin
Tracking and line integration of diffuse cellular subdomains by mesh advection. EMBC (2019)
Daniel Felipe Gonzalez Obando, Diana Mandache, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images. ECDP (2019)
Diana Mandache, E. Dalimier, J. R. Durkin, C. Boceara, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Basal cell carcinoma detection in full field OCT images using convolutional neural networks. ISBI (2018)
Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Morphological operations on polygons using straight skeletons for digital pathology. ISBI (2018)
William Meiniel, Jean-Christophe Olivo-Marin, Elsa D. Angelini
Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method. IEEE Trans. Image Process. 27 (8) (2018)
Oscar Bauer, Thomas Bourgeron, Jean-Christophe Olivo-Marin, Elodie Ey, Fabrice de Chaumont
Unsupervised analysis of mouse social behaviour reveals how hyperactivity impacts social aspects in a mouse model of autism. ISBI (2018)
William Meiniel, Piernicola Spinicelli, Elsa D. Angelini, Alexandra Fragola, Vincent Loriette, François Orieux, Eduardo Sepulveda, Jean-Christophe Olivo-Marin
Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing. ISBI (2017)
Daniel F. Gonzalez Obando, Lauriane Rohfritsch, Manon Faure, Lydia Danglot, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin, Alexandre Cecilien Dufour
Quad-edge active contours for biomedical image segmentation. ISBI (2017)
Oscar Bauer, Anne-Marie Le Sourd, Giacomo Nardi, Thomas Bourgeron, Jean-Christophe Olivo-Marin, Elodie Ey, Fabrice de Chaumont
Unbiased analysis of mouse social behaviour using unsupervised machine learning. ISBI (2017)
Daniel F. Gonzalez Obando, Astri Frafjord, Inger Oynebraten, Alexandre Corthay, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Multi-staining registration of large histology images. ISBI (2017)
Thibault Lagache, Giacomo Nardi, Laetitia Bertot, Alexandre Grassart, Nathalie Sauvonnet, Jean-Christophe Olivo-Marin
Combining global tracking with statistical classification to analyze endocytosis dynamics using TIRF microscopy. ISBI (2017)
Raphaël Marée, Stephane Dallongeville, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
An approach for detection of glomeruli in multisite digital pathology. ISBI (2016)
Aleix Boquet-Pujadas, Maria Manich, Nancy Guillen, Jean-Christophe Olivo-Marin, Alexandre Cecilien Dufour
Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow. ISBI (2016)
Charles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. IEEE J. Sel. Top. Signal Process. 10 (1) (2016)
William Meiniel, Yu Gan, Christine P. Hendon, Jean-Christophe Olivo-Marin, Andrew F. Laine, Elsa D. Angelini
Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples. ISBI (2016)
Charles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser
Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. IEEE J. Sel. Top. Signal Process. 10 (1) (2016)
Alexandre Cecilien Dufour, Tzu-Yu Liu, Christel Ducroz, Robin Tournemenne, Beryl Cummings, Roman Thibeaux, Nancy Guillen, Alfred O. Hero III, Jean-Christophe Olivo-Marin
Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye. IEEE Signal Process. Mag. 32 (1) (2015)
William Meiniel, Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Image denoising by multiple compressed sensing reconstructions. ISBI (2015)
Thibault Lagache, Quentin Marcou, Antoine Bardonnet, Brice Rotureau, Philippe Bastin, Jean-Christophe Olivo-Marin
Using steerable wavelets and minimal paths to reconstruct automatically filaments in fluorescence imaging. ICIP (2015)
Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
An Unbiased Risk Estimator for Image Denoising in the Presence of Mixed Poisson-Gaussian Noise. IEEE Trans. Image Process. 23 (3) (2014)
Costanza Simoncini, Timothee Lecomte, Roman Thibeaux, Nancy Guillen, Alexandre Dufour, Jean-Christophe Olivo-Marin
Fluid dynamics modeling of cell and membrane deformations. ISBI (2014)
Robin Tournemenne, Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
3D shape analysis using overcomplete spherical wavelets: Application to BLEB detection in cell biology. ISBI (2014)
Mariña López-Yunta, Thibault Lagache, Julien Santi-Rocca, Philippe Bastin, Jean-Christophe Olivo-Marin
A statistical analysis of spatial clustering along cell filaments using Ripley's K function. ISBI (2014)
Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
Multiple Hypothesis Tracking for Cluttered Biological Image Sequences. IEEE Trans. Pattern Anal. Mach. Intell. 35 (11) (2013)
Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Phase retrieval with sparsity priors and application to microscopy video reconstruction. ISBI (2013)
Thibault Lagache, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin
A statistical analysis of spatial colocalization using Ripley's K function. ISBI (2013)
Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
Automatic detection of 3D cell protrusions using spherical wavelets. ICIP (2013)
Fabrice de Chaumont, Stephane Dallongeville, Thomas Provoost, Timothee Lecomte, Alexandre Dufour, Jean-Christophe Olivo-Marin
Icy: A user-friendly environment for algorithm development and deployment. EUSIPCO (2013)
Sorin Pop, Alexandre Dufour, Jean-Francois Le Garrec, Chiara V. Ragni, Clémire Cimper, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin
Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart. Bioinform. 29 (6) (2013)
Ge Yang, Jean-Christophe Olivo-Marin
Image-based representation and modeling of spatiotemporal cell dynamics. ISBI (2013)
François Orieux, Eduardo Sepulveda, Vincent Loriette, Benoit Dubertret, Jean-Christophe Olivo-Marin
Bayesian Estimation for Optimized Structured Illumination Microscopy. IEEE Trans. Image Process. 21 (2) (2012)
Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications. ICIP (2012)
Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
Characterization of cell shape and deformation in 3D using Spherical Harmonics. ISBI (2012)
Timothee Lecomte, Roman Thibeaux, Nancy Guillen, Alexandre Dufour, Jean-Christophe Olivo-Marin
Fluid optical flow for forces and pressure field estimation in cellular biology. ICIP (2012)
Sorin Pop, Alexandre Dufour, Jean-Christophe Olivo-Marin
Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy. ICIP (2011)
Jean-Christophe Olivo-Marin, Michael Unser, Laure Blanc-Féraud, Andrew Laine, Boudewijn P. F. Lelieveldt
Trends in Bioimaging and Signal Processing [In the Spotlight]. IEEE Signal Process. Mag. 28 (6) (2011)
Nicolas Hervé, Aude Servais, Eric Thervet, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Statistical color texture descriptors for histological images analysis. ISBI (2011)
Olivier Lezoray, Metin N. Gurcan, Ali Can, Jean-Christophe Olivo-Marin
Special issue on whole slide microscopic image processing. Comput. Medical Imaging Graph. 35 (7-8) (2011)
Alexandre Dufour, Roman Thibeaux, Elisabeth Labruyere, Nancy Guillen, Jean-Christophe Olivo-Marin
3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy. IEEE Trans. Image Process. 20 (7) (2011)
Sorin Pop, Alexandre Dufour, Jean-Francois Le Garrec, Chiara V. Ragni, Margaret E. Buckingham, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin
A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy. ISBI (2011)
Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Comparison of reconstruction algorithms in compressed sensing applied to biological imaging. ISBI (2011)
Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences. EMBC (2011)
Fabrice de Chaumont, Stephane Dallongeville, Jean-Christophe Olivo-Marin
ICY: A new open-source community image processing software. ISBI (2011)
Praveen Pankajakshan, Alain Dieterlen, Gilbert Engler, Zvi Kam, Laure Blanc-Féraud, Josiane Zerubia, Jean-Christophe Olivo-Marin
Wavefront sensing for aberration modeling in fluorescence macroscopy. ISBI (2011)
Yoann Le Montagner, Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing. ICIP (2011)
Marcio de Moraes Marim, Michael Atlan, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Compressed sensing for digital holographic microscopy. ISBI (2010)
Nicolas Chenouard, Johanna Buisson, Isabelle Bloch, Philippe Bastin, Jean-Christophe Olivo-Marin
Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images. ICIP (2010)
Marcio de Moraes Marim, Michael Atlan, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Compressed Sensing with off-axis frequency-shifting holography CoRR (2010)
Sylvain Berlemont, Jean-Christophe Olivo-Marin
Combining Local Filtering and Multiscale Analysis for Edge, Ridge, and Curvilinear Objects Detection. IEEE Trans. Image Process. 19 (1) (2010)
Nicolas Hervé, Aude Servais, Eric Thervet, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Improving histology images segmentation through spatial constraints and supervision. ICIP (2010)
Fabrice de Chaumont, Stephane Dallongeville, Nicolas Chenouard, Jean-Christophe Olivo-Marin
Tracking multiple articulated objects using physics engines: Improvement using multi scale decomposition and quadtrees. ICIP (2010)
Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin
Compressed Sensing in microscopy with random projections in the Fourier domain. ICIP (2009)
Fabrice de Chaumont, Alexandre Dufour, Jean-Christophe Olivo-Marin
Tracking articulated objects with physics engines. ICIP (2009)
Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin
A Compressed Sensing Approach for Biological Microscopic Image Processing. ISBI (2009)
Fabrice de Chaumont, Alexandre Dufour, Pierre Serreau, Johnathan Chabout, Sylvia Münter, Friedrich Frischknecht, Sylvie Granon, Jean-Christophe Olivo-Marin
Using Physics Engines to Track Objects in Images. ISBI (2009)
Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
Particle tracking in fluorescent microscopy images improved by morphological source separation. ICIP (2009)
Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
Multiple hypothesis tracking in cluttered condition. ICIP (2009)
Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
Multiple Hypothesis Tracking in Microscopy Images. ISBI (2009)
Bo Zhang, Nicolas Chenouard, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Statistical colocalization in biological imaging with false discovery control. ISBI (2008)
Fabrice de Chaumont, Nicolas Chenouard, Aurelie Mouret, Pierre Marie Lledo, Jean-Christophe Olivo-Marin
A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification. ISBI (2008)
Nicolas Chenouard, Samantha Vernhettes, Isabelle Bloch, Jean-Christophe Olivo-Marin
Morphological source separation for particle tracking in complex biological environments. ICPR (2008)
Sylvain Berlemont, Régis Tournebize, Aaron Bensimon, Jean-Christophe Olivo-Marin
Detection of full length microtubules in live microscopy images. ISBI (2008)
Clovis Tauber, Pedro Felipe Gardeazabal Rodriguez, Vincent Loriette, Nicolas Chenouard, Benoit Dubertret, Jean-Christophe Olivo-Marin
Fast and automatic reconstruction of structured illumination microscopy images with multiscale products. ICPR (2008)
Marcio de Moraes Marim, Bo Zhang, Jean-Christophe Olivo-Marin, Christophe Zimmer
Improving single particle localization with an empirically calibrated Gaussian kernel. ISBI (2008)
Jean-Christophe Olivo-Marin
Session MA2: Advances in bioimaging and analysis. ACSCC (2008)
Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
Feature-aided particle tracking. ICIP (2008)
Alexandre Dufour, Vannary Meas-Yedid, Alexandre Grassart, Jean-Christophe Olivo-Marin
Automated quantification of cell endocytosis using active contours and wavelets. ICPR (2008)
Praveen Pankajakshan, Bo Zhang, Laure Blanc-Féraud, Zvi Kam, Jean-Christophe Olivo-Marin, Josiane Zerubia
Blind deconvolution for diffraction-limited fluorescence microscopy. ISBI (2008)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jean-Christophe Olivo-Marin