Arrate Muñoz-Barrutia

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 36

Top Topics

Pixel Classification

Top Venues

IEEE Signal Process. Mag.

IEEE Trans. Medical Imaging

Publications

Lorena Gallego-Viñarás, Juan Miguel Mira-Tomas, Anna Michela-Gaeta, Gerard Pinol-Ripoll, Ferran Barbé, Pablo M. Olmos, Arrate Muñoz-Barrutia
Alzheimer's disease detection in PSG signals. CoRR (2024)
Wanlu Lei, Caterina Fuster-Barceló, Arrate Muñoz-Barrutia, Wei Ouyang
BioImage.IO Chatbot: A Personalized Assistant for BioImage Analysis Augmented by Community Knowledge Base. CoRR (2023)
Selin Aviyente, Alejandro F. Frangi, Erik Meijering, Arrate Muñoz-Barrutia, Michael Liebling, Dimitri Van De Ville, Jean-Christophe Olivo-Marin, Jelena Kovacevic, Michael Unser
From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process. Mag. 40 (4) (2023)
Laura Nicolás-Sáenz, Agapito Ledezma, Javier Pascau, Arrate Muñoz-Barrutia
ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Analysis. Sensors 23 (6) (2023)
Daniel Franco-Barranco, Jesús A. Andrés-San Román, Pedro Gómez-Gálvez, Luis M. Escudero, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
BiaPy: a ready-to-use library for Bioimage Analysis Pipelines. ISBI (2023)
Daniel Franco-Barranco, Julio Pastor-Tronch, Aitor Gonzalez-Marfil, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
Deep learning based domain adaptation for mitochondria segmentation on EM volumes. Comput. Methods Programs Biomed. 222 (2022)
Daniel Franco-Barranco, Julio Pastor-Tronch, Aitor Gonzalez-Marfil, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
Deep learning based domain adaptation for mitochondria segmentation on EM volumes. CoRR (2022)
Laura Nicolás-Sáenz, Agapito Ledezma, Javier Pascau, Arrate Muñoz-Barrutia
ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Segmentation. CoRR (2022)
Daniel Franco-Barranco, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes. Neuroinformatics 20 (2) (2022)
Pedro M. Gordaliza, Juan José Vaquero, Arrate Muñoz-Barrutia
Translational Lung Imaging Analysis Through Disentangled Representations. CoRR (2022)
Daniel Franco-Barranco, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
Stable deep neural network architectures for mitochondria segmentation on electron microscopy volumes. CoRR (2021)
Chiara Lowe, Ana Ortega-Gil, Mahdieh Moghiseh, Nigel G. Anderson, Arrate Muñoz-Barrutia, Juan José Vaquero, Aamir Younas Raja, Aysouda Matanaghi, Alexander I. Chernoglazov, Theodorus Dapamede, Sikiru A. Adebileje, Steven Alexander, Maya R. Amma, Marzieh Anjomrouz, Fatemeh Asghariomabad, Ali Atharifard, James Atlas, Kenzie Baer, Stephen T. Bell, Srinidhi Bheesette, Philip H. Butler, Pierre Carbonez, Claire Chambers, Krishna M. Chapagain, Jennifer A. Clark, Frances Colgan, Jonathan S. Crighton, Shishir Dahal, Jérôme Damet, Niels J. A. De Ruiter, Robert M. N. Doesburg, Neryda Duncan, Nooshin Ghodsian, Steven P. Gieseg, Brian P. Goulter, Sam Gurney, Joseph L. Healy, Praveen Kumar Kanithi, Tracy Kirkbride, Stuart P. Lansley, V. B. H. Mandalika, Emmanuel Marfo, David Palmer, Raj K. Panta, Hannah M. Prebble, Peter Renaud, Yann Sayous, Nanette Schleich, Emily Searle, Jereena S. Sheeja, Lieza Vanden Broeke, Vivek V. S., E. Peter Walker, Michael F. Walsh, Manoj Wijesooriya, W. Ross Younger, Anthony P. H. Butler
Molecular Imaging of Pulmonary Tuberculosis in an Ex-Vivo Mouse Model Using Spectral Photon-Counting Computed Tomography and Micro-CT. IEEE Access 9 (2021)
B. Farina, A. D. Ramos Guerra, C. Palacios Miras, G. Gallardo Madueño, Arrate Muñoz-Barrutia, G. R. Peces-Barba, L. Seijo Maceiras, J. Corral, I. Gil-Bazo, M. Dómine Gómez, María J. Ledesma-Carbayo
Delta-Radiomics Signature For Prediction Of Survival In Advanced Nsclc Patients Treated With Immunotherapy. ISBI (2021)
Estibaliz Gómez-de-Mariscal, Hasini Jayatilaka, Özgün Çiçek, Thomas Brox, Denis Wirtz, Arrate Muñoz-Barrutia
Search for temporal cell segmentation robustness in phase-contrast microscopy videos. CoRR (2021)
Sébastien Tosi, Lídia Bardia, Maria Jose Barallobre, Arrate Muñoz-Barrutia, María Luisa Soto-Montenegro, Julien Colombelli
MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy. F1000Research 9 (2020)
Laura Nicolás-Sáenz, Sara Guerrero-Aspizua, Javier Pascau, Arrate Muñoz-Barrutia
Nonlinear Image Registration and Pixel Classification Pipeline for the Study of Tumor Heterogeneity Maps. Entropy 22 (9) (2020)
Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. IEEE Trans. Medical Imaging 39 (10) (2020)
Vishal Monga, Scott T. Acton, Abd-Krim Seghouane, Arrate Muñoz-Barrutia, Jong Chul Ye
Editorial: Introduction to the Issue on Domain Enriched Learning for Medical Imaging. IEEE J. Sel. Top. Signal Process. 14 (6) (2020)
Amaro Torres-Simón, María Henar Marino, Clara Gómez-Cruz, Marina Cañadas, Miguel Marco, Jorge Ripoll, Juan José Vaquero, Arrate Muñoz-Barrutia
Development of an Inverted Epifluorescence Microscope for Long-Term Monitoring of Bacteria in Multiplexed Microfluidic Devices. Sensors 20 (15) (2020)
Dinggang Shen, Yaozong Gao, Arrate Muñoz-Barrutia, Delia Cabrera DeBuc, Gennaro Percannella
Guest Editorial: Special Issue on Imaging-Based Diagnosis of COVID-19. IEEE Trans. Medical Imaging 39 (8) (2020)
P. M. Gordaliza, Juan José Vaquero, S. Sharpe, F. Gleeson, Arrate Muñoz-Barrutia
Tuberculosis Lesions in CT Images Inferred using 3D-CNN and Multi-Task Learning. ISBI (2019)
Mikel Ariz, Ricardo C. Abad, Gabriel Castellanos, Martin Martinez, Arrate Muñoz-Barrutia, María A. Fernández-Seara, Pau Pastor, María A. Pastor, Carlos Ortiz-de-Solorzano
Dynamic Atlas-Based Segmentation and Quantification of Neuromelanin-Rich Brainstem Structures in Parkinson Disease. IEEE Trans. Medical Imaging 38 (3) (2019)
Erik Meijering, Arrate Muñoz-Barrutia
Spotlight on Bioimaging and Signal Processing [In the Spotlight]. IEEE Signal Process. Mag. 35 (6) (2018)
Jirí Borovec, Arrate Muñoz-Barrutia, Jan Kybic
Benchmarking of Image Registration Methods for Differently Stained Histological Slides. ICIP (2018)
Ana Ortega-Gil, Arrate Muñoz-Barrutia, Laura Fernandez-Terron, Juan José Vaquero
Tuberculosis Histopathology on X Ray CT. RAMBO+BIA+TIA@MICCAI (2018)
P. M. Gordaliza, Juan José Vaquero, S. Sharpe, Manuel Desco, Arrate Muñoz-Barrutia
Towards an informational model for tuberculosis lesion discrimination on X-ray CT images. ISBI (2018)
Alejandro Sune-Aunon, Alvaro Jorge-Penas, Hans Van Oosterwyck, Arrate Muñoz-Barrutia
Super-resolved Traction Force Microscopy over whole cells. ISBI (2017)
Alejandro Sune-Aunon, Mario Gonzalez-Arjona, Alejandro Vidal, Javier Lanillos, Arrate Muñoz-Barrutia
Automated analysis of collagen networks via microscopy. EUSIPCO (2017)
Alejandro Sune-Aunon, Alvaro Jorge-Penas, Rocío Aguilar-Cuenca, Miguel Vicente-Manzanares, Hans Van Oosterwyck, Arrate Muñoz-Barrutia
-regularized Traction Force Microscopy over whole cells. BMC Bioinform. 18 (1) (2017)
Alejandro Sune-Aunon, Alvaro Jorge-Penas, Hans Van Oosterwyck, Arrate Muñoz-Barrutia
L1-regularized reconstruction for traction force microscopy. ISBI (2016)
Rina Dewi Rudyanto, Carlos Ortiz-de-Solórzano, Arrate Muñoz-Barrutia
Quantification of pulmonary vessel diameter in low-dose CT images. Medical Imaging: Computer-Aided Diagnosis (2015)
Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
Quantification of the 3D collagen network geometry in confocal reflection microscopy. ICIP (2015)
Arrate Muñoz-Barrutia, Jelena Kovacevic, Michal Kozubek, Erik Meijering, Braham Parvin
Quantitative Bioimaging: Signal Processing in Light Microscopy [From the Guest Editors]. IEEE Signal Process. Mag. 32 (1) (2015)
Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek
Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling. IEEE Signal Process. Mag. 32 (1) (2015)
Marc Puigvert, Gabriel Castellanos, Javier Uranga, Ricardo C. Abad, María A. Fernández-Seara, Pau Pastor, María A. Pastor, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Atlas-based segmentation of brainstem regions in neuromelanin-sensitive magnetic resonance images. Medical Imaging: Computer-Aided Diagnosis (2015)
María Anguiano, Carlos Castilla, Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Rafael Peláez, Ana Rouzaut, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
Characterization of the role of collagen network structure and composition in cancer cell migration. EMBC (2015)
Thomas Pengo, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
A Novel Automated Microscopy Platform for Multiresolution Multispectral Early Detection of Lung Cancer Cells in Bronchoalveolar Lavage Samples. IEEE Syst. J. 8 (3) (2014)
Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
A benchmark for comparison of cell tracking algorithms. Bioinform. 30 (11) (2014)
Martin Maska, Ondrej Danek, Saray Garasa, Ana Rouzaut, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Trans. Medical Imaging 32 (6) (2013)
Jirí Borovec, Jan Kybic, Michael Busta, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
Registration of multiple stained histological sections. ISBI (2013)
Rina Dewi Rudyanto, Arrate Muñoz-Barrutia, Alejandro A. Díaz, James C. Ross, George R. Washko, Carlos Ortiz-de-Solorzano, Raúl San José Estépar
Modeling airway probability. ISBI (2013)
Martin Maska, Xabier Morales, Arrate Muñoz-Barrutia, Ana Rouzaut, Carlos Ortiz-de-Solorzano
Automatic quantification of filopodia-based cell migration. ISBI (2013)
Rina Dewi Rudyanto, Gorka Bastarrika, Gabriel de Biurrun, Jackeline Agorreta, Luis M. Montuenga, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model. Medical Image Anal. 17 (8) (2013)
Rina Dewi Rudyanto, Ainhoa Agirre, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia
Individual nodule tracking in micro-CT images of a mouse model of lung cancer. ISBI (2012)
Arrate Muñoz-Barrutia, Mario Ceresa, Xabier Artaechevarria, Luis M. Montuenga, Carlos Ortiz-de-Solorzano
Quantification of Lung Damage in an Elastase-Induced Mouse Model of Emphysema. Int. J. Biomed. Imaging 2012 (2012)
Victor Segura, Alejandro Toledo-Arana, Maite Uzqueda, Iñigo Lasa, Arrate Muñoz-Barrutia
Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray. BMC Bioinform. 13 (2012)
Mario Ceresa, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Characterization of emphysema in low dose computed tomography images using maximum likelihood estimation of the scale exponent. ISBI (2012)
Rina Dewi Rudyanto, Mario Ceresa, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solórzano
Detecting airway remodeling in COPD and emphysema using low-dose CT imaging. Medical Imaging: Computer-Aided Diagnosis (2012)
Martin Maska, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Fast tracking of fluorescent cells based on the Chan-Vese model. ISBI (2012)
Arrate Muñoz-Barrutia, Xabier Artaechevarria, Carlos Ortiz-de-Solorzano
Spatially Variant Convolution With Scaled B-Splines. IEEE Trans. Image Process. 19 (1) (2010)
Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
Fast space-variant elliptical filtering using box splines CoRR (2010)
Kunal Narayan Chaudhury, Zsuzsanna Püspöki, Arrate Muñoz-Barrutia, Daniel Sage, Michael Unser
Fast detection of cells using a continuously scalable Mexican-hat-like template. ISBI (2010)
Mario Ceresa, Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Automatic leakage detection and recovery for airway tree extraction in chest CT images. ISBI (2010)
Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
Fast Space-Variant Elliptical Filtering Using Box Splines. IEEE Trans. Image Process. 19 (9) (2010)
Ondrej Danek, Pavel Matula, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Martin Maska, Michal Kozubek
Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. SCIA (2009)
Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
Fast adaptive elliptical filtering using box splines CoRR (2009)
Martin Maska, Ondrej Danek, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Michal Kozubek, Ignacio Fernández García
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. SCIA (2009)
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data. IEEE Trans. Medical Imaging 28 (8) (2009)
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solórzano
Efficient classifier generation and weighted voting for atlas-based segmentation: two small steps faster and closer to the combination oracle. Medical Imaging: Image Processing (2008)
Kunal Narayan Chaudhury, Arrate Muñoz-Barrutia, Michael Unser
Fast adaptive elliptical filtering using box splines. ICIP (2008)
Carlos Ortiz-de-Solorzano, Thomas Pengo, Miguel Galarraga, Arrate Muñoz-Barrutia
Automation of the detection of lung cancer cells in minimal samples of bronchioalveolar lavage. ISBI (2008)
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Restoration of Micro-Ct Images Using Locally Adaptive B-Spline Smoothing. ISBI (2007)
Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Restoration of Biomedical Images using Locally Adaptive B-Spline Smoothing. ICIP (2) (2007)
G. Vidal-Cassanya, Arrate Muñoz-Barrutia, Michael Unser
Locally adaptive smoothing method based on B-splines. CompIMAGE (2006)