Kimmo Kartasalo

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 20

Top Topics

Histopathology Images

Convolutional Neural Networks

Automatic Registration

Top Venues

Publications

Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue. Medical Image Anal. 97 (2024)
Xiaoyi Ji, Richard Salmon, Nita Mulliqi, Umair Khan, Yinxi Wang, Anders Blilie, Henrik Olsson, Bodil Ginnerup Pedersen, Karina Dalsgaard Sørensen, Benedicte Parm Ulhøi, Svein Reidar Kjosavik, Emilius AM Janssen, Mattias Rantalainen, Lars Egevad, Pekka Ruusuvuori, Martin Eklund, Kimmo Kartasalo
Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence Assisted Cancer Diagnosis. CoRR (2023)
Øystein Øvrebø, Miina Ojansivu, Kimmo Kartasalo, Hanna M. G. Barriga, Petter Ranefall, Margaret N. Holme, Molly M. Stevens
RegiSTORM: channel registration for multi-color stochastic optical reconstruction microscopy. BMC Bioinform. 24 (1) (2023)
Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
The ACROBAT 2022 Challenge: Automatic Registration Of Breast Cancer Tissue. CoRR (2023)
Philippe Weitz, Yinxi Wang, Kimmo Kartasalo, Lars Egevad, Johan Lindberg, Henrik Grönberg, Martin Eklund, Mattias Rantalainen
Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks. Bioinform. 38 (13) (2022)
Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
ACROBAT - a multi-stain breast cancer histological whole-slide-image data set from routine diagnostics for computational pathology. CoRR (2022)
Nita Mulliqi, Kimmo Kartasalo, Henrik Olsson, Xiaoyi Ji, Lars Egevad, Martin Eklund, Pekka Ruusuvuori
OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology. Bioinform. 37 (21) (2021)
Philippe Weitz, Yinxi Wang, Kimmo Kartasalo, Lars Egevad, Johan Lindberg, Henrik Grönberg, Martin Eklund, Mattias Rantalainen
Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression based convolutional neural networks. CoRR (2021)
Kaisa Liimatainen, Leena Latonen, Masi Valkonen, Kimmo Kartasalo, Pekka Ruusuvuori
Virtual reality for 3D histology: multi-scale visualization of organs with interactive feature exploration. CoRR (2020)
Peter Ström, Kimmo Kartasalo, Pekka Ruusuvuori, Henrik Grönberg, Hemamali Samaratunga, Brett Delahunt, Toyonori Tsuzuki, Lars Egevad, Martin Eklund
Detection of Perineural Invasion in Prostate Needle Biopsies with Deep Neural Networks. CoRR (2020)
Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. IEEE Trans. Medical Imaging 39 (10) (2020)
Yinxi Wang, Kimmo Kartasalo, Masi Valkonen, Christer Larsson, Pekka Ruusuvuori, Johan Hartman, Mattias Rantalainen
Predicting molecular phenotypes from histopathology images: a transcriptome-wide expression-morphology analysis in breast cancer. CoRR (2020)
Martin Eklund, Kimmo Kartasalo, Henrik Olsson, Peter Ström
The importance of study design in the application of artificial intelligence methods in medicine. npj Digit. Medicine 2 (2019)
Kaisa Liimatainen, Leena Latonen, Kimmo Kartasalo, Pekka Ruusuvuori
3D-Printed Whole Prostate Models with Tumor Hotspots Using Dual-Extruder Printer. EMBC (2019)
Peter Ström, Kimmo Kartasalo, Henrik Olsson, Leslie Solorzano, Brett Delahunt, Daniel M. Berney, David G. Bostwick, Andrew J. Evans, David J. Grignon, Peter A. Humphrey, Kenneth A. Iczkowski, James G. Kench, Glen Kristiansen, Theodorus H. van der Kwast, Katia R. M. Leite, Jesse K. McKenney, Jon Oxley, Chin-Chen Pan, Hemamali Samaratunga, John R. Srigley, Hiroyuki Takahashi, Toyonori Tsuzuki, Murali Varma, Ming Zhou, Johan Lindberg, Cecilia Bergström, Pekka Ruusuvuori, Carolina Wählby, Henrik Grönberg, Mattias Rantalainen, Lars Egevad, Martin Eklund
Pathologist-Level Grading of Prostate Biopsies with Artificial Intelligence. CoRR (2019)
Kimmo Kartasalo, Leena Latonen, Jorma Vihinen, Tapio Visakorpi, Matti Nykter, Pekka Ruusuvuori
Comparative analysis of tissue reconstruction algorithms for 3D histology. Bioinform. 34 (17) (2018)
Mira Valkonen, Kimmo Kartasalo, Kaisa Liimatainen, Matti Nykter, Leena Latonen, Pekka Ruusuvuori
Dual Structured Convolutional Neural Network with Feature Augmentation for Quantitative Characterization of Tissue Histology. ICCV Workshops (2017)
Jyrki Rasku, Marisa Ojala, Risto-Pekka Pölönen, Henry Joutsijoki, Yulia Gizatdinova, Jorma Laurikkala, Kimmo Kartasalo, Katriina Aalto-Setälä, Martti Juhola
A software tool for studying the size and shape of human cardiomyocytes. Biomed. Signal Process. Control. 30 (2016)
Kimmo Kartasalo, Leena Latonen, Tapio Visakorpi, Matti Nykter, Pekka Ruusuvuori
Benchmarking of algorithms for 3D tissue reconstruction. ICIP (2016)
Kimmo Kartasalo, Risto-Pekka Pölönen, Marisa Ojala, Jyrki Rasku, Jukka Lekkala, Katriina Aalto-Setälä, Pasi Kallio
CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels. BMC Bioinform. 16 (2015)