Alexander R. A. Anderson

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 15

Top Topics

Hybrid Automata

Automatic Registration

Top Venues

PLoS Comput. Biol.

Publications

Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue. Medical Image Anal. 97 (2024)
Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen
The ACROBAT 2022 Challenge: Automatic Registration Of Breast Cancer Tissue. CoRR (2023)
Sandhya Prabhakaran, Chandler Gatenbee, Alexander R. A. Anderson
Developing tools for analyzing and viewing multiplexed images. Patterns 3 (7) (2022)
Sandhya Prabhakaran, Chandler Gatenbee, Mark Robertson-Tessi, Jeffrey West, Amer A. Beg, Jhanelle Gray, Scott Antonia, Robert A. Gatenby, Alexander R. A. Anderson
Mistic: An open-source multiplexed image t-SNE viewer. Patterns 3 (7) (2022)
Jeffrey West, Yongqian Ma, Artem Kaznatcheev, Alexander R. A. Anderson
IsoMaTrix: a framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations. Bioinform. 36 (22-23) (2021)
Tyler Cassidy, Daniel Nichol, Mark Robertson-Tessi, Morgan Craig, Alexander R. A. Anderson
The role of memory in non-genetic inheritance and its impact on cancer treatment resistance. PLoS Comput. Biol. 17 (8) (2021)
Rafael R. Bravo, Etienne Baratchart, Jeffrey West, Ryan O. Schenck, Anna K. Miller, Jill Gallaher, Chandler Gatenbee, David Basanta, Mark Robertson-Tessi, Alexander R. A. Anderson
Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization. PLoS Comput. Biol. 16 (3) (2020)
Jill Gallaher, Susan Christine Massey, Andrea Hawkins-Daarud, Sonal S. Noticewala, Russell C. Rockne, Sandra K. Johnston, Luis Gonzalez-Cuyar, Joseph Juliano, Orlando Gil, Kristin R. Swanson, Peter Canoll, Alexander R. A. Anderson
From cells to tissue: How cell scale heterogeneity impacts glioblastoma growth and treatment response. PLoS Comput. Biol. 16 (2) (2020)
Derek S. Park, Afua Abrafi Boakye, David E. Muench, H. Leighton Grimes, Pearlie K. Epling-Burnette, Philip K. Maini, Alexander R. A. Anderson, Michael B. Bonsall
Clonal hematopoiesis of indeterminate potential and its impact on patient trajectories after stem cell transplantation. PLoS Comput. Biol. 15 (4) (2019)
Ryan O. Schenck, Eszter Lakatos, Chandler Gatenbee, Trevor A. Graham, Alexander R. A. Anderson
NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline. BMC Bioinform. 20 (1) (2019)
Chandler Gatenbee, Ryan O. Schenck, Rafael R. Bravo, Alexander R. A. Anderson
EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data. BMC Bioinform. 20 (1) (2019)
Philip Gerlee, David Basanta, Alexander R. A. Anderson
The Influence of Cellular Characteristics on the Evolution of Shape Homeostasis. Artif. Life 23 (3) (2017)
Noemi Picco, Robert A. Gatenby, Alexander R. A. Anderson
Stem Cell Plasticity and Niche Dynamics in Cancer Progression. IEEE Trans. Biomed. Eng. 64 (3) (2017)
Jacob G. Scott, Alexander G. Fletcher, Alexander R. A. Anderson, Philip K. Maini
Spatial Metrics of Tumour Vascular Organisation Predict Radiation Efficacy in a Computational Model. PLoS Comput. Biol. 12 (1) (2016)
Daniel Nichol, Peter Jeavons, Alexander G. Fletcher, Robert A. Bonomo, Philip K. Maini, Jerome L. Paul, Robert A. Gatenby, Alexander R. A. Anderson, Jacob G. Scott
Steering Evolution with Sequential Therapy to Prevent the Emergence of Bacterial Antibiotic Resistance. PLoS Comput. Biol. 11 (9) (2015)
Jacob G. Scott, Anita B. Hjelmeland, Prakash Chinnaiyan, Alexander R. A. Anderson, David Basanta
Microenvironmental Variables Must Influence Intrinsic Phenotypic Parameters of Cancer Stem Cells to Affect Tumourigenicity. PLoS Comput. Biol. 10 (1) (2014)
Jacob G. Scott, Prakash Chinnaiyan, Alexander R. A. Anderson, Anita B. Hjelmeland, David Basanta
Intrinsic cell factors that influence tumourigenicity in cancer stem cells - towards hallmarks of cancer stem cells CoRR (2013)
Philip Gerlee, David Basanta, Alexander R. A. Anderson
Evolving Homeostatic Tissue Using Genetic Algorithms. ALIFE (2010)
Katarzyna A. Rejniak, Shizhen E. Wang, Nicole S. Bryce, Hang Chang, Bahram Parvin, Jerome Jourquin, Lourdes Estrada, Joe W. Gray, Carlos L. Arteaga, Alissa M. Weaver, Vito Quaranta, Alexander R. A. Anderson
Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling. PLoS Comput. Biol. 6 (8) (2010)
Philip Gerlee, Alexander R. A. Anderson
Modelling evolutionary cell behaviour using neural networks: Application to tumour growth. Biosyst. 95 (2) (2009)
Philip Gerlee, Torbjörn Lundh, Bing Zhang, Alexander R. A. Anderson
The gene-function relationship in the metabolism of yeast and digital organisms. ALIFE (2008)
Ignacio Ramis-Conde, Mark A. J. Chaplain, Alexander R. A. Anderson
Mathematical modelling of cancer cell invasion of tissue. Math. Comput. Model. 47 (5-6) (2008)
Bruce P. Ayati, Glenn F. Webb, Alexander R. A. Anderson
Computational Methods and Results for Structured Multiscale Models of Tumor Invasion. Multiscale Model. Simul. 5 (1) (2006)
Angélique Stéphanou, Steven R. McDougall, Alexander R. A. Anderson, Mark A. J. Chaplain
Mathematical modelling of the influence of blood rheological properties upon adaptative tumour-induced angiogenesis. Math. Comput. Model. 44 (1-2) (2006)
Angélique Stéphanou, Steven R. McDougall, Alexander R. A. Anderson, Mark A. J. Chaplain
Mathematical modelling of flow in 2D and 3D vascular networks: Applications to anti-angiogenic and chemotherapeutic drug strategies. Math. Comput. Model. 41 (10) (2005)
Fordyce A. Davidson, Alexander R. A. Anderson, Mark A. J. Chaplain
Steady-state solutions of a generic model for the formation of capillary networks. Appl. Math. Lett. 13 (5) (2000)