Bing Zhang

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 6

Top Topics

Data Collection

Quality Evaluation

Top Venues

Nucleic Acids Res.

Publications

Bo Wen, Eric J. Jaehnig, Bing Zhang
OmicsEV: a tool for comprehensive quality evaluation of omics data tables. Bioinform. 38 (24) (2022)
Seungyeul Yoo, Zhiao Shi, Bo Wen, Soon Jye Kho, Renke Pan, Hanying Feng, Hong Chen, Anders Carlsson, Patrik Edén, Weiping Ma, Michael L. Raymer, Ezekiel J. Maier, Zivana Tezak, Elaine Johanson, Denise Hinton, Henry Rodriguez, Jun Zhu, Emily Boja, Pei Wang, Bing Zhang
A community effort to identify and correct mislabeled samples in proteogenomic studies. Patterns 2 (5) (2021)
Suhas V. Vasaikar, Peter Straub, Jing Wang, Bing Zhang
LinkedOmics: analyzing multi-omics data within and across 32 cancer types. Nucleic Acids Res. 46 (Database-Issue) (2018)
Junhui Shen, Suhas V. Vasaikar, Bing Zhang
DLAD4U: deriving and prioritizing disease lists from PubMed literature. BMC Bioinform. (17) (2018)
Jing Wang, Suhas V. Vasaikar, Zhiao Shi, Michael Greer, Bing Zhang
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Bo Wen, Shaohang Xu, Ruo Zhou, Bing Zhang, Xiaojing Wang, Xin Liu, Xun Xu, Siqi Liu
PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq. BMC Bioinform. 17 (2016)
Jing Zhu, Zhiao Shi, Jing Wang, Bing Zhang
Empowering biologists with multi-omics data: colorectal cancer as a paradigm. Bioinform. 31 (9) (2015)
Xiaojing Wang, Bing Zhang
: an R package to generate customized protein databases from RNA-Seq data for proteomics search. Bioinform. 29 (24) (2013)
Jing Wang, Dexter T. Duncan, Zhiao Shi, Bing Zhang
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Yufei Huang, Zhongming Zhao, Hua Xu, Yu Shyr, Bing Zhang
Advances in systems biology: computational algorithms and applications. BMC Syst. Biol. 6 (S-3) (2012)
Mingguang Shi, Bing Zhang
Semi-supervised learning improves gene expression-based prediction of cancer recurrence. Bioinform. 27 (21) (2011)
Zhiao Shi, Bing Zhang
Fast network centrality analysis using GPUs. BMC Bioinform. 12 (2011)
Zhiao Shi, Catherine K. Derow, Bing Zhang
Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression. BMC Syst. Biol. 4 (2010)
Dexter T. Duncan, Naresh Prodduturi, Bing Zhang
WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit. BMC Bioinform. 11 (S-4) (2010)
Jing Li, Zeqiang Ma, Robbert J. C. Slebos, David L. Tabb, Daniel C. Liebler, Bing Zhang
Enabling proteomics-based identification of human cancer variations. BMC Bioinform. 11 (S-4) (2010)
Bing Zhang, Jing Li, David L. Tabb, Byung-Hoon Park
Network Approaches for Shotgun Proteomics Data Analysis. IJCBS (2009)
Xi Chen, Lily Wang, Jonathan D. Smith, Bing Zhang
Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes. Bioinform. 24 (21) (2008)
Philip Gerlee, Torbjörn Lundh, Bing Zhang, Alexander R. A. Anderson
The gene-function relationship in the metabolism of yeast and digital organisms. ALIFE (2008)
Bing Zhang, Byung-Hoon Park, Tatiana V. Karpinets, Nagiza F. Samatova
From pull-down data to protein interaction networks and complexes with biological relevance. Bioinform. 24 (7) (2008)
Byung-Hoon Park, Bing Zhang, Tatiana V. Karpinets, Nagiza F. Samatova
Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance. BIBM (2007)
Bing Zhang, Stefan Kirov, Jay Snoddy
WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Bing Zhang, Denise Schmoyer, Stefan Kirov, Jay Snoddy
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies. BMC Bioinform. 5 (2004)