Nagiza F. Samatova

Publication Activity (10 Years)

Years Active: 2000-2022
Publications (10 Years): 33

Top Venues

SDM

ADMA

CCGRID

CLUSTER

Publications

Yifan Zhao, Xian Yang, Carolina Bolnykh, Steve Harenberg, Nodirbek Korchiev, Saavan Raj Yerramsetty, Bhanu Prasad Vellanki, Ramakanth Kodumagulla, Nagiza F. Samatova
Predictive models with end user preference. Stat. Anal. Data Min. 15 (1) (2022)
Sergey V. Meleshko, Nagiza F. Samatova
Group classification of the two-dimensional shallow water equations with the beta-plane approximation of coriolis parameter in Lagrangian coordinates. Commun. Nonlinear Sci. Numer. Simul. 90 (2020)
Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova
An Interpretable Generative Adversarial Approach to Classification of Latent Entity Relations in Unstructured Sentences. AAAI (2018)
Ruixin Yang, Junyi He, Mingyang Xu, Haoqi Ni, Paul Jones, Nagiza F. Samatova
An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting. ICDM (2018)
Shiou Tian Hsu, Mandar S. Chaudhary, Nagiza F. Samatova
Multilevel Heuristics for Rationale-Based Entity Relation Classification in Sentences. COLING (2018)
Mandar S. Chaudhary, Nagiza F. Samatova
Causal Relationship Prediction with Continuous Additive Noise Models. CD@KDD (2018)
Changsung Moon, Paul Jones, Nagiza F. Samatova
Learning Entity Type Embeddings for Knowledge Graph Completion. CIKM (2017)
Stephen Ranshous, Cliff A. Joslyn, Sean Kreyling, Kathleen Nowak, Nagiza F. Samatova, Curtis L. West, Samuel Winters
Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph. Financial Cryptography Workshops (2017)
Mingyang Xu, Ruixin Yang, Paul Jones, Nagiza F. Samatova
Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model. CICLing (2) (2017)
Ruixin Yang, Mingyang Xu, Junyi He, Stephen Ranshous, Nagiza F. Samatova
An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting. ADMA (2017)
Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova
A Hybrid CNN-RNN Alignment Model for Phrase-Aware Sentence Classification. EACL (2) (2017)
Mandar S. Chaudhary, Stephen Ranshous, Nagiza F. Samatova
A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery. COMPLEX NETWORKS (2017)
Paul Jones, Shivani Sharma, Changsung Moon, Nagiza F. Samatova
A Network-Fusion Guided Dashboard Interface for Task-Centric Document Curation. IUI (2017)
Ruixin Yang, Mingyang Xu, Paul Jones, Nagiza F. Samatova
Real time utility-based recommendation for revenue optimization via an adaptive online Top-K high utility itemsets mining model. ICNC-FSKD (2017)
Mingyang Xu, Ruixin Yang, Steve Harenberg, Nagiza F. Samatova
A Lifelong Learning Topic Model Structured Using Latent Embeddings. ICSC (2017)
Steve Harenberg, Mandar S. Chaudhary, Nagiza F. Samatova
Mining Persistent and Discriminative Communities in Graph Ensembles. SSDBM (2017)
Mingyang Xu, Ruixin Yang, Stephen Ranshous, Shijie Li, Nagiza F. Samatova
Leveraging External Knowledge for Phrase-Based Topic Modeling. TAAI (2017)
Changsung Moon, Steve Harenberg, John Slankas, Nagiza F. Samatova
Learning Contextual Embeddings for Knowledge Graph Completion. PACIS (2017)
Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar
Theory-Guided Data Science: A New Paradigm for Scientific Discovery from Data. IEEE Trans. Knowl. Data Eng. 29 (10) (2017)
Paul Jones, Dakota Medd, Sreekanth Ramakrishnan, Rajat Shah, Joann Keyton, Nagiza F. Samatova
Towards Automatic Linkage of Knowledge Worker's Claims with Associated Evidence from Screenshots. BigDataService (2017)
Stephen Ranshous, Mandar S. Chaudhary, Nagiza F. Samatova
Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing. COMPLEX NETWORKS (2017)
Wenbin Chen, William Hendrix, Nagiza F. Samatova
-Partite Graph Problem to the Multiple Alignment for Metabolic Pathways. J. Comput. Biol. 24 (12) (2017)
Houjun Tang, Suren Byna, Steve Harenberg, Wenzhao Zhang, Xiaocheng Zou, Daniel F. Martin, Bin Dong, Dharshi Devendran, Kesheng Wu, David Trebotich, Scott Klasky, Nagiza F. Samatova
In Situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses. ICPP (2016)
Wenzhao Zhang, Houjun Tang, Steve Harenberg, Surendra Byna, Xiaocheng Zou, Dharshi Devendran, Daniel F. Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza F. Samatova
AMRZone: A Runtime AMR Data Sharing Framework for Scientific Applications. CCGrid (2016)
Stephen Ranshous, Steve Harenberg, Kshitij Sharma, Nagiza F. Samatova
A Scalable Approach for Outlier Detection in Edge Streams Using Sketch-based Approximations. SDM (2016)
Wenzhao Zhang, Houjun Tang, Stephen Ranshous, Surendra Byna, Daniel F. Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza F. Samatova
Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications. IEEE BigData (2016)
Houjun Tang, Surendra Byna, Steve Harenberg, Xiaocheng Zou, Wenzhao Zhang, Kesheng Wu, Bin Dong, Oliver Rübel, Kristofer E. Bouchard, Scott Klasky, Nagiza F. Samatova
Usage Pattern-Driven Dynamic Data Layout Reorganization. CCGrid (2016)
Gonzalo A. Bello, Steve Harenberg, Abhishek Agrawal, Nagiza F. Samatova
Community Detection in Dynamic Attributed Graphs. ADMA (2016)
Changsung Moon, Dakota Medd, Paul Jones, Steve Harenberg, William Oxbury, Nagiza F. Samatova
Online Prediction of User Actions through an Ensemble Vote from Vector Representation and Frequency Analysis Models. SDM (2016)
Mandar S. Chaudhary, Doel L. Gonzalez II, Gonzalo A. Bello, Michael P. Angus, Dhara Desai, Steve Harenberg, P. Murali Doraiswamy, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
Causality-Guided Feature Selection. ADMA (2016)
Wenbin Chen, Nagiza F. Samatova, Matthias F. Stallmann, William Hendrix, Weiqin Ying
On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems. Theor. Comput. Sci. 609 (2016)
Steve Harenberg, Ramona G. Seay, Gonzalo A. Bello, Rada Chirkova, P. Murali Doraiswamy, Nagiza F. Samatova
Knowledge-Guided Maximal Clique Enumeration. ADMA (2016)
Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar
Theory-guided Data Science: A New Paradigm for Scientific Discovery. CoRR (2016)
Gonzalo A. Bello, Michael P. Angus, Navya Pedemane, Jitendra K. Harlalka, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
Response-Guided Community Detection: Application to Climate Index Discovery. ECML/PKDD (2) (2015)
Wenzhao Zhang, Houjun Tang, Xiaocheng Zou, Steve Harenberg, Qing Liu, Scott Klasky, Nagiza F. Samatova
Exploring Memory Hierarchy to Improve Scientific Data Read Performance. CLUSTER (2015)
Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova, Shaohong Zhang
An efficient algorithm for pairwise local alignment of protein interaction networks. J. Bioinform. Comput. Biol. 13 (2) (2015)
David A. Boyuka II, Houjun Tang, Kushal Bansal, Xiaocheng Zou, Scott Klasky, Nagiza F. Samatova
The hyperdyadic index and generalized indexing and query with PIQUE. SSDBM (2015)
Xiaocheng Zou, Kesheng Wu, David A. Boyuka II, Daniel F. Martin, Surendra Byna, Houjun Tang, Kushal Bansal, Terry J. Ligocki, Hans Johansen, Nagiza F. Samatova
Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data. CCGRID (2015)
Wenbin Chen, Zhengzhang Chen, Nagiza F. Samatova, Lingxi Peng, Jianxiong Wang, Maobin Tang
Solving the maximum duo-preservation string mapping problem with linear programming. Theor. Comput. Sci. 530 (2014)
Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay F. Lofstead, Ron A. Oldfield, Manish Parashar, Nagiza F. Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks. Concurr. Comput. Pract. Exp. 26 (7) (2014)
James H. Faghmous, Arindam Banerjee, Shashi Shekhar, Michael S. Steinbach, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova
Theory-Guided Data Science for Climate Change. Computer 47 (11) (2014)
Steve Harenberg, Ramona G. Seay, Stephen Ranshous, Kanchana Padmanabhan, Jitendra K. Harlalka, Eric R. Schendel, Michael P. O'Brien, Rada Chirkova, William Hendrix, Alok N. Choudhary, Vipin Kumar, Murali Doraiswamy, Nagiza F. Samatova
Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations. SDM (2014)
Houjun Tang, Xiaocheng Zou, John Jenkins, David A. Boyuka II, Stephen Ranshous, Dries Kimpe, Scott Klasky, Nagiza F. Samatova
Improving Read Performance with Online Access Pattern Analysis and Prefetching. Euro-Par (2014)
Xiaocheng Zou, Sriram Lakshminarasimhan, David A. Boyuka II, Stephen Ranshous, Houjun Tang, Scott Klasky, Nagiza F. Samatova
Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes. Euro-Par (2014)
David A. Boyuka II, Sriram Lakshminarasimhan, Xiaocheng Zou, Zhenhuan Gong, John Jenkins, Eric R. Schendel, Norbert Podhorszki, Qing Liu, Scott Klasky, Nagiza F. Samatova
Transparent in Situ Data Transformations in ADIOS. CCGRID (2014)
Sriram Lakshminarasimhan, Xiaocheng Zou, David A. Boyuka II, Saurabh V. Pendse, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Scott Klasky, Nagiza F. Samatova
DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance. Clust. Comput. 17 (4) (2014)
John Jenkins, James Dinan, Pavan Balaji, Tom Peterka, Nagiza F. Samatova, Rajeev Thakur
Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data. IEEE Trans. Parallel Distributed Syst. 25 (10) (2014)
John Jenkins, Xiaocheng Zou, Houjun Tang, Dries Kimpe, Robert B. Ross, Nagiza F. Samatova
RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication. ISC (2014)
Sriram Lakshminarasimhan, David A. Boyuka II, Saurabh V. Pendse, Xiaocheng Zou, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova
Scalable in situ scientific data encoding for analytical query processing. HPDC (2013)
Zhengzhang Chen, Alok N. Choudhary, John Jenkins, Vipin Kumar, Anatoli V. Melechko, Jinfeng Rao, Nagiza F. Samatova, Fredrick H. M. Semazzi
Automatic Detection and Correction of Multi-class Classification Errors Using System Whole-part Relationships. SDM (2013)
Zhenhuan Gong, David A. Boyuka II, Xiaocheng Zou, Qing Liu, Norbert Podhorszki, Scott Klasky, Xiaosong Ma, Nagiza F. Samatova
PARLO: PArallel Run-Time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns. CCGRID (2013)
Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Peter K. Snyder, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi
A graph-based approach to find teleconnections in climate data. Stat. Anal. Data Min. 6 (3) (2013)
Doel L. Gonzalez, Saurabh V. Pendse, Kanchana Padmanabhan, Michael P. Angus, Isaac K. Tetteh, Shashank Srinivas, Andrea Villanes, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
Coupled Heterogeneous Association Rule Mining (CHARM): Application Toward Inference of Modulatory Climate Relationships. ICDM (2013)
John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, David A. Boyuka II, Eric R. Schendel, Neil Shah, Stéphane Ethier, Choong-Seock Chang, Jackie Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova
ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying. Trans. Large Scale Data Knowl. Centered Syst. 10 (2013)
Eric R. Schendel, Steve Harenberg, Houjun Tang, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova
A Generic High-Performance Method for Deinterleaving Scientific Data. Euro-Par (2013)
Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Seung-Hoe Ku, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
ISABELA for effective in situ compression of scientific data. Concurr. Comput. Pract. Exp. 25 (4) (2013)
Zhengzhang Chen, Yusheng Xie, Yu Cheng, Kunpeng Zhang, Ankit Agrawal, Wei-keng Liao, Nagiza F. Samatova, Alok N. Choudhary
Forecast Oriented Classification of Spatio-Temporal Extreme Events. IJCAI (2013)
Zhengzhang Chen, William Hendrix, Hang Guan, Isaac K. Tetteh, Alok N. Choudhary, Fredrick H. M. Semazzi, Nagiza F. Samatova
Discovery of extreme events-related communities in contrasting groups of physical system networks. Data Min. Knowl. Discov. 27 (2) (2013)
Zhenhuan Gong, Sriram Lakshminarasimhan, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova
Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data. IPDPS (2012)
Eric R. Schendel, Ye Jin, Neil Shah, Jackie Chen, Choong-Seock Chang, Seung-Hoe Ku, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression. ICDE (2012)
Doel L. Gonzalez, Zhengzhang Chen, Isaac K. Tetteh, Tatdow Pansombut, Fredrick H. M. Semazzi, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova
Hierarchical Classifier-Regression Ensemble for Multi-phase Non-linear Dynamic System Response Prediction: Application to Climate Analysis. ICDM Workshops (2012)
Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Yekaterina Shpanskaya, Jillian F. Banfield, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova
NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems. PLoS Comput. Biol. 8 (5) (2012)
Neil Shah, Eric R. Schendel, Sriram Lakshminarasimhan, Saurabh V. Pendse, Terry Rogers, Nagiza F. Samatova
Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility. CLUSTER (2012)
Sriram Lakshminarasimhan, Prabhat Kumar, Wei-keng Liao, Alok N. Choudhary, Vipin Kumar, Nagiza F. Samatova
On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions. IGCC (2012)
Zhengzhang Chen, Kanchana Padmanabhan, Andrea M. Rocha, Yekaterina Shpanskaya, James R. Mihelcic, Kathleen Scott, Nagiza F. Samatova
Spice: discovery of phenotype-determining component interplays. BMC Syst. Biol. 6 (2012)
Saurabh V. Pendse, Isaac K. Tetteh, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova
Toward Data-driven, Semi-automatic Inference of Phenomenological Physical Models: Application to Eastern Sahel Rainfall. SDM (2012)
John Jenkins, James Dinan, Pavan Balaji, Nagiza F. Samatova, Rajeev Thakur
Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments. CLUSTER (2012)
Eric R. Schendel, Saurabh V. Pendse, John Jenkins, David A. Boyuka II, Zhenhuan Gong, Sriram Lakshminarasimhan, Qing Liu, Hemanth Kolla, Jackie Chen, Scott Klasky, Robert B. Ross, Nagiza F. Samatova
ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization. HPDC (2012)
John Jenkins, Eric R. Schendel, Sriram Lakshminarasimhan, David A. Boyuka II, Terry Rogers, Stéphane Ethier, Robert B. Ross, Scott Klasky, Nagiza F. Samatova
Byte-precision level of detail processing for variable precision analytics. SC (2012)
Zhengzhang Chen, William Hendrix, Nagiza F. Samatova
Community-based anomaly detection in evolutionary networks. J. Intell. Inf. Syst. 39 (1) (2012)
John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, Neil Shah, Eric R. Schendel, Stéphane Ethier, Choong-Seock Chang, Jacqueline H. Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova
Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying. DEXA (2) (2012)
Zhenhuan Gong, Terry Rogers, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova
MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns. ICPP (2012)
Kevin A. Wilson, Andrea M. Rocha, Kanchana Padmanabhan, Kuangyu Wang, Zhengzhang Chen, Ye Jin, James R. Mihelcic, Nagiza F. Samatova
Detecting Pathway Cross-Talks by Analyzing Conserved Functional Modules across Multiple Phenotype-Expressing Organisms. BIBM (2011)
Jiangtian Li, Xiaosong Ma, Srikanth B. Yoginath, Guruprasad Kora, Nagiza F. Samatova
Transparent runtime parallelization of the R scripting language. J. Parallel Distributed Comput. 71 (2) (2011)
Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi, Peter K. Snyder, Vipin Kumar
Data Guided Discovery of Dynamic Climate Dipoles. CIDU (2011)
Sriram Lakshminarasimhan, John Jenkins, Isha Arkatkar, Zhenhuan Gong, Hemanth Kolla, Seung-Hoe Ku, Stéphane Ethier, Jackie Chen, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data. SC (2011)
Heshan Lin, Xiaosong Ma, Wu-chun Feng, Nagiza F. Samatova
Coordinating Computation and I/O in Massively Parallel Sequence Search. IEEE Trans. Parallel Distributed Syst. 22 (4) (2011)
William Hendrix, Andrea M. Rocha, Kanchana Padmanabhan, Alok N. Choudhary, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova
DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules. BMC Syst. Biol. 5 (2011)
Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova
On the parameterized complexity of the Multi-MCT and Multi-MCST problems. J. Comb. Optim. 21 (2) (2011)
Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Zhengzhang Chen, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova
Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules. BMC Bioinform. 12 (2011)
Huseyin Sencan, Zhengzhang Chen, William Hendrix, Tatdow Pansombut, Fredrick H. M. Semazzi, Alok N. Choudhary, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova
Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction. IJCAI (2011)
Tatdow Pansombut, William Hendrix, Zekai Jacob Gao, Brent E. Harrison, Nagiza F. Samatova
Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems. IJCAI (2011)
Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova
Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data. Euro-Par (1) (2011)
Ye Jin, Sriram Lakshminarasimhan, Neil Shah, Zhenhuan Gong, Choong-Seock Chang, Jackie Chen, Stéphane Ethier, Hemanth Kolla, Seung-Hoe Ku, Scott Klasky, Robert Latham, Robert B. Ross, Karen Schuchardt, Nagiza F. Samatova
S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy. ICDM (2011)
John Jenkins, Isha Arkatkar, John D. Owens, Alok N. Choudhary, Nagiza F. Samatova
Lessons Learned from Exploring the Backtracking Paradigm on the GPU. Euro-Par (2) (2011)
William Hendrix, Tatiana V. Karpinets, Byung-Hoon Park, Eric R. Schendel, Alok N. Choudhary, Nagiza F. Samatova
Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data. IPDPS Workshops (2011)
Tatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher
knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. Database J. Biol. Databases Curation 2010 (2010)
William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova
Theoretical underpinnings for maximal clique enumeration on perturbed graphs. Theor. Comput. Sci. 411 (26-28) (2010)
Zhengzhang Chen, Kevin A. Wilson, Ye Jin, William Hendrix, Nagiza F. Samatova
Detecting and Tracking Community Dynamics in Evolutionary Networks. ICDM Workshops (2010)
Wenhong Tian, Matthew C. Schmidt, Wenbin Chen, Nagiza F. Samatova
Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns. BIOCOMP (2010)
Wenbin Chen, Andrea M. Rocha, William Hendrix, Matthew C. Schmidt, Nagiza F. Samatova
The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction. ICDM Workshops (2010)
Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova
sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinform. 11 (2010)
William Hendrix, Andrea M. Rocha, Mark T. Elmore, Joe Trien, Nagiza F. Samatova
Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production. BIOCOMP (2010)
Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova
PackPlay: Mining Semantic Data in Collaborative Games. Linguistic Annotation Workshop (2010)
Tatdow Pansombut, Brent E. Harrison, Dennis Bahler, Nagiza F. Samatova
Improving the Performance of Bayesian Belief Network Classifiers via Decision Tree Based Feature Selection. IKE (2010)
Paul Breimyer, Guruprasad Kora, Nagiza F. Samatova
Web-Enabled R for Large-Scale Collaborative Data Mining: A Survey. IKE (2009)
Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova
A Fast, Accurate Algorithm for Identifying Functional Modules Through Pairwise Local Alignment of Protein Interaction Networks. BIOCOMP (2009)
Paul Breimyer, William Hendrix, Guruprasad Kora, Nagiza F. Samatova
pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R. IKE (2009)
Matthew C. Schmidt, Nagiza F. Samatova, Kevin Thomas, Byung-Hoon Park
A scalable, parallel algorithm for maximal clique enumeration. J. Parallel Distributed Comput. 69 (4) (2009)
Matthew C. Schmidt, Nagiza F. Samatova
An Algorithm for the Discovery of Phenotype Related Metabolic Pathways. BIBM (2009)

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Publication Activity (10 Years)

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Nagiza F. Samatova