Chongle Pan

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 12

Top Topics

Ensemble Pruning

Linguistic Analysis

Bayesian Inference

Top Venues

PLoS Comput. Biol.

Publications

Paul Calle, Ruosi Shao, Yunlong Liu, Emily T. Hébert, Darla E. Kendzor, Jordan M. Neil, Michael S. Businelle, Chongle Pan
Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians' Evaluation of Large Language Models for Smoking Cessation Interventions. CHI (2024)
Bailu Zhang, Shichao Feng, Manushi Parajuli, Yi Xiong, Chongle Pan, Xuan Guo
SEMQuant: Extending Sipros-Ensemble with Match-Between-Runs for Comprehensive Quantitative Metaproteomics. ISBRA (3) (2024)
Adrien Badré, Li Zhang, Wellington Muchero, Justin C. Reynolds, Chongle Pan
Deep neural network improves the estimation of polygenic risk scores for breast cancer. CoRR (2023)
Yuning Cui, Yifu Li, Chongle Pan, Stephanie R. Brown, Rachel E. Gallant, Rui Zhu
Bayesian inference for survival prediction of childhood Leukemia. Comput. Biol. Medicine 156 (2023)
Adrien Badré, Chongle Pan
Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis. PLoS Comput. Biol. 19 (7) (2023)
Jiancheng Li, Chongle Pan, Xuan Guo
IDIA: An Integrative Signal Extractor for Data-Independent Acquisition Proteomics. BIBM (2022)
Shengze Wang, Shichao Feng, Chongle Pan, Xuan Guo
FineFDR: Fine-grained Taxonomy-specific False Discovery Rates Control in Metaproteomics. BIBM (2022)
Adrien Badré, Chongle Pan
LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations. IEEE Access 10 (2022)
Shichao Feng, Hong-Long Ji, Huan Wang, Bailu Zhang, Ryan Sterzenbach, Chongle Pan, Xuan Guo
MetaLP: An integrative linear programming method for protein inference in metaproteomics. PLoS Comput. Biol. 18 (10) (2022)
Xuan Guo, Zhou Li, Qiuming Yao, Ryan S. Mueller, Jimmy K. Eng, David L. Tabb, IV William Judson Hervey, Chongle Pan
Sipros Ensemble improves database searching and filtering for complex metaproteomics. Bioinform. 34 (5) (2018)
Alexander J. Paul, Dylan Lawrence, Myoungkyu Song, Seung-Hwan Lim, Chongle Pan, Tae-Hyuk Ahn
SORA: Scalable Overlap-graph Reduction Algorithms for Genome Assembly using Apache Spark in the Cloud. BIBM (2018)
Tae-Hyuk Ahn, Juanjuan Chai, Chongle Pan
Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance. Bioinform. 31 (2) (2015)
Bahlul Haider, Tae-Hyuk Ahn, Brian Bushnell, Juanjuan Chai, Alex Copeland, Chongle Pan
Assembler for Metagenomics. Bioinform. 30 (19) (2014)
Yingfeng Wang, Tae-Hyuk Ahn, Zhou Li, Chongle Pan
Sipros/ProRata: a versatile informatics system for quantitative community proteomics. Bioinform. 29 (16) (2013)
Doug Hyatt, Chongle Pan
Exhaustive database searching for amino acid mutations in proteomes. Bioinform. 28 (14) (2012)
Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova
sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinform. 11 (2010)
Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinform. 21 (5) (2005)
Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB (2004)