Weikuan Yu

ORCID

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 36

Top Venues

Publications

François Tessier, Weikuan Yu
ESSA 2024 Message and Committees. IPDPS (Workshops) (2024)
Olga Kogiou, Hariharan Devarajan, Chen Wang, Weikuan Yu, Kathryn M. Mohror
I/O characterization and performance evaluation of large-scale storage architectures for heterogeneous workloads. CLUSTER Workshops (2023)
Xingang Fang, Julia Klawohn, Alexander De Sabatino, Harsh Kundnani, Jonathan Ryan, Weikuan Yu, Greg Hajcak
Accurate classification of depression through optimized machine learning models on high-dimensional noisy data. Biomed. Signal Process. Control. 71 (Part) (2022)
Fahim Chowdhury, Francesco Di Natale, Adam Moody, Kathryn Mohror, Weikuan Yu
DFMan: A Graph-based Optimization of Dataflow Scheduling on High-Performance Computing Systems. IPDPS (2022)
Zhenxin Li, Bing Jiao, Shuibing He, Weikuan Yu
PhaST: Hierarchical Concurrent Log-Free Skip List for Persistent Memory. IEEE Trans. Parallel Distributed Syst. 33 (10) (2022)
Ismail Ataie, Weikuan Yu
SVAGC: Garbage Collection with a Scalable Virtual Address Swapping Technique. CLUSTER (2022)
Subhadeep Bhattacharya, Weikuan Yu, Fahim Tahmid Chowdhury, Kathryn Mohror
O(1) Communication for Distributed SGD through Two-Level Gradient Averaging. CLUSTER (2021)
Rupak Roy, Kento Sato, Subhadeep Bhattacharya, Xingang Fang, Yasumasa Joti, Takaki Hatsui, Toshiyuki Nishiyama Hiraki, Jian Guo, Weikuan Yu
Compression of Time Evolutionary Image Data through Predictive Deep Neural Networks. CCGRID (2021)
Md. Muhib Khan, Weikuan Yu
ROBOTune: High-Dimensional Configuration Tuning for Cluster-Based Data Analytics. ICPP (2021)
André Brinkmann, Kathryn Mohror, Weikuan Yu, Philip H. Carns, Toni Cortes, Scott Klasky, Alberto Miranda, Franz-Josef Pfreundt, Robert B. Ross, Marc-Andre Vef
Ad Hoc File Systems for High-Performance Computing. J. Comput. Sci. Technol. 35 (1) (2020)
Subhadeep Bhattacharya, Weikuan Yu, Fahim Tahmid Chowdhury
O(1) Communication for Distributed SGD through Two-Level Gradient Averaging. CoRR (2020)
Fahim Chowdhury, Yue Zhu, Francesco Di Natale, Adam Moody, Elsa Gonsiorowski, Kathryn Mohror, Weikuan Yu
Emulating I/O Behavior in Scientific Workflows on High Performance Computing Systems. PDSW@SC (2020)
Tonmoy Dey, Kento Sato, Bogdan Nicolae, Jian Guo, Jens Domke, Weikuan Yu, Franck Cappello, Kathryn Mohror
Optimizing Asynchronous Multi-Level Checkpoint/Restart Configurations with Machine Learning. IPDPS Workshops (2020)
Zhuo Liu, Amit Kumar Nath, Xiaoning Ding, Huansong Fu, Md. Muhib Khan, Weikuan Yu
Multivariate modeling and two-level scheduling of analytic queries. Parallel Comput. 85 (2019)
Fahim Chowdhury, Yue Zhu, Todd Heer, Saul Paredes, Adam Moody, Robin Goldstone, Kathryn Mohror, Weikuan Yu
I/O Characterization and Performance Evaluation of BeeGFS for Deep Learning. ICPP (2019)
Md. Muhib Khan, Muhammad Ahad Ul Alam, Amit Kumar Nath, Weikuan Yu
Exploration of memory hybridization for RDD caching in Spark. ISMM (2019)
Huansong Fu, Yue Zhu, Amit Kumar Nath, Md. Muhib Khan, Weikuan Yu
Enhancing MapReduce Fault Recovery Through Binocular Speculation. CoRR (2019)
Yue Zhu, Weikuan Yu, Bing Jiao, Kathryn Mohror, Adam Moody, Fahim Chowdhury
Efficient User-Level Storage Disaggregation for Deep Learning. CLUSTER (2019)
Zhuo Liu, Bin Wang, Weikuan Yu
HALO: a fast and durable disk write cache using phase change memory. Clust. Comput. 21 (2) (2018)
Yue Zhu, Fahim Chowdhury, Huansong Fu, Adam Moody, Kathryn Mohror, Kento Sato, Weikuan Yu
Entropy-Aware I/O Pipelining for Large-Scale Deep Learning on HPC Systems. MASCOTS (2018)
Yue Zhu, Teng Wang, Kathryn Mohror, Adam Moody, Kento Sato, Muhib Khan, Weikuan Yu
Direct-FUSE: Removing the Middleman for High-Performance FUSE File System Support. ROSS@HPDC (2018)
Subhadeep Bhattacharya, Shaeke Salman, Manjunath Gorentla Venkata, Harsh Kundnani, Neena Imam, Weikuan Yu
An Initial Implementation of Libfabric Conduit for OpenSHMEM-X. OpenSHMEM (2018)
Weikuan Yu, Zhuo Liu, Xiaoning Ding
Semantics-Aware Prediction for Analytic Queries in MapReduce Environment. ICPP Workshops (2018)
Huansong Fu, Manjunath Gorentla Venkata, Shaeke Salman, Neena Imam, Weikuan Yu
SHMEMGraph: Efficient and Balanced Graph Processing Using One-Sided Communication. CCGrid (2018)
Huansong Fu, Haiquan Chen, Yue Zhu, Weikuan Yu
FARMS: Efficient mapreduce speculation for failure recovery in short jobs. Parallel Comput. 61 (2017)
André Brinkmann, Kathryn Mohror, Weikuan Yu
Challenges and Opportunities of User-Level File Systems for HPC (Dagstuhl Seminar 17202). Dagstuhl Reports 7 (5) (2017)
Teng Wang, Adam Moody, Yue Zhu, Kathryn Mohror, Kento Sato, Tanzima Z. Islam, Weikuan Yu
MetaKV: A Key-Value Store for Metadata Management of Distributed Burst Buffers. IPDPS (2017)
Huansong Fu, Manjunath Gorentla Venkata, Ahana Roy Choudhury, Neena Imam, Weikuan Yu
High-Performance Key-Value Store On OpenSHMEM. CCGrid (2017)
Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng
A case study of tuning MapReduce for efficient Bioinformatics in the cloud. Parallel Comput. 61 (2017)
Huansong Fu, Manjunath Gorentla Venkata, Neena Imam, Weikuan Yu
Portable SHMEMCache: A High-Performance Key-Value Store on OpenSHMEM and MPI. OpenSHMEM (2017)
Cong Xu, Robin Goldstone, Zhuo Liu, Hui Chen, Byron Neitzel, Weikuan Yu
Exploiting Analytics Shipping with Virtualized MapReduce on HPC Backend Storage Servers. IEEE Trans. Parallel Distributed Syst. 27 (1) (2016)
Teng Wang, Kevin Vasko, Zhuo Liu, Hui Chen, Weikuan Yu
Enhance parallel input/output with cross-bundle aggregation. Int. J. High Perform. Comput. Appl. 30 (2) (2016)
Teng Wang, Kathryn Mohror, Adam Moody, Kento Sato, Weikuan Yu
An ephemeral burst-buffer file system for scientific applications. SC (2016)
Huansong Fu, Swaroop Pophale, Manjunath Gorentla Venkata, Weikuan Yu
DISP: Optimizations towards Scalable MPI Startup. COMHPC@SC (2016)
Huansong Fu, Kunal SinghaRoy, Manjunath Gorentla Venkata, Yue Zhu, Weikuan Yu
SHMemCache: Enabling Memcached on the OpenSHMEM Global Address Model. OpenSHMEM (2016)
Bin Wang, Yue Zhu, Weikuan Yu
OAWS: Memory Occlusion Aware Warp Scheduling. PACT (2016)
Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng
Performance evaluation and tuning of BioPig for genomic analysis. DISCS@SC (2015)
Huansong Fu, Yue Zhu, Weikuan Yu
A case study of MapReduce speculation for failure recovery. DISCS@SC (2015)
Weikuan Yu, Yandong Wang, Xinyu Que, Cong Xu
Virtual Shuffling for Efficient Data Movement in MapReduce. IEEE Trans. Computers 64 (2) (2015)
Fang Zhou, Hai Pham, Jianhui Yue, Hao Zou, Weikuan Yu
SFMapReduce: An optimized MapReduce framework for Small Files. NAS (2015)
Yandong Wang, Huansong Fu, Weikuan Yu
Cracking Down MapReduce Failure Amplification through Analytics Logging and Migration. IPDPS (2015)
Teng Wang, Sarp Oral, Michael Pritchard, Kevin Vasko, Weikuan Yu
Development of a Burst Buffer System for Data-Intensive Applications. CoRR (2015)
Bin Wang, Zhuo Liu, Xinning Wang, Weikuan Yu
Eliminating intra-warp conflict misses in GPU. DATE (2015)
Bin Wang, Weikuan Yu, Xian-He Sun, Xinning Wang
DaCache: Memory Divergence-Aware GPU Cache Management. ICS (2015)
Xinning Wang, Bin Wang, Zhuo Liu, Weikuan Yu
Preserving Row Buffer Locality for PCM Wear-Leveling under Massive Parallelism. MASCOTS (2015)
Teng Wang, Sarp Oral, Michael Pritchard, Bin Wang, Weikuan Yu
TRIO: Burst Buffer Based I/O Orchestration. CLUSTER (2015)
Teng Wang, Kevin Vasko, Zhuo Liu, Hui Chen, Weikuan Yu
BPAR: a bundle-based parallel aggregation framework for decoupled I/O execution. DISCS@SC (2014)
Yandong Wang, Robin Goldstone, Weikuan Yu, Teng Wang
Characterization and Optimization of Memory-Resident MapReduce on HPC Systems. IPDPS (2014)
Jian Tan, Yandong Wang, Weikuan Yu, Li Zhang
Non-work-conserving effects in MapReduce: diffusion limit and criticality. SIGMETRICS (2014)
Weikuan Yu, Yandong Wang, Xinyu Que
Design and Evaluation of Network-Levitated Merge for Hadoop Acceleration. IEEE Trans. Parallel Distributed Syst. 25 (3) (2014)
Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay F. Lofstead, Ron A. Oldfield, Manish Parashar, Nagiza F. Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks. Concurr. Comput. Pract. Exp. 26 (7) (2014)
Yuan Tian, Cong Xu, Weikuan Yu, Jeffrey S. Vetter, Scott Klasky, Honggao Liu, Saad Biaz
neCODEC: nearline data compression for scientific applications. Clust. Comput. 17 (2) (2014)
Teng Wang, Sarp Oral, Yandong Wang, Bradley W. Settlemyer, Scott Atchley, Weikuan Yu
BurstMem: A high-performance burst buffer system for scientific applications. IEEE BigData (2014)
Zhuo Liu, Jay F. Lofstead, Teng Wang, Weikuan Yu
A case of system-wide power management for scientific applications. CLUSTER (2013)
Yandong Wang, Cong Xu, Xiaobing Li, Weikuan Yu
JVM-Bypass for Efficient Hadoop Shuffling. IPDPS (2013)
Yuan Tian, Zhuo Liu, Scott Klasky, Bin Wang, Hasan Abbasi, Shujia Zhou, Norbert Podhorszki, Tom Clune, Jeremy Logan, Weikuan Yu
A lightweight I/O scheme to facilitate spatial and temporal queries of scientific data analytics. MSST (2013)
Xiaobing Li, Yandong Wang, Yizheng Jiao, Cong Xu, Weikuan Yu
CooMR: cross-task coordination for efficient data management in MapReduce programs. SC (2013)
Zhuo Liu, Bin Wang, Teng Wang, Yuan Tian, Cong Xu, Yandong Wang, Weikuan Yu, Carlos A. Cruz, Shujia Zhou, Tom Clune, Scott Klasky
Profiling and Improving I/O Performance of a Large-Scale Climate Scientific Application. ICCCN (2013)
Yuan Tian, Scott Klasky, Weikuan Yu, Bin Wang, Hasan Abbasi, Norbert Podhorszki, Ray W. Grout
DynaM: Dynamic Multiresolution Data Representation for Large-Scale Scientific Analysis. NAS (2013)
Bin Wang, Weikuan Yu
Performance and Power Simulation for Versatile GPGPU Global Memory. IPDPS Workshops (2013)
Cong Xu, Manjunath Gorentla Venkata, Richard L. Graham, Yandong Wang, Zhuo Liu, Weikuan Yu
SLOAVx: Scalable LOgarithmic AlltoallV Algorithm for Hierarchical Multicore Systems. CCGRID (2013)
Yandong Wang, Jian Tan, Weikuan Yu, Li Zhang, Xiaoqiao Meng, Xiaobing Li
Preemptive ReduceTask Scheduling for Fair and Fast Job Completion. ICAC (2013)
Bin Wang, Bo Wu, Dong Li, Xipeng Shen, Weikuan Yu, Yizheng Jiao, Jeffrey S. Vetter
Exploring hybrid memory for GPU energy efficiency through software-hardware co-design. PACT (2013)
Bin Wang, Yizheng Jiao, Weikuan Yu, Xipeng Shen, Dong Li, Jeffrey S. Vetter
A Versatile Performance and Energy Simulation Tool for Composite GPU Global Memory. MASCOTS (2013)
Yandong Wang, Yizheng Jiao, Cong Xu, Xiaobing Li, Teng Wang, Xinyu Que, Cristian Cira, Bin Wang, Zhuo Liu, Bliss Bailey, Weikuan Yu
Assessing the Performance Impact of High-Speed Interconnects on MapReduce. WBDB (2012)
Yuan Tian, Scott Klasky, Weikuan Yu, Hasan Abbasi, Bin Wang, Norbert Podhorszki, Ray W. Grout, Matthew Wolf
A system-aware optimized data organization for efficient scientific analytics. HPDC (2012)
Yuan Tian, Scott Klasky, Weikuan Yu, Hasan Abbasi, Bin Wang, Norbert Podhorszki, Ray W. Grout, Matthew Wolf
SMART-IO: SysteM-AwaRe Two-Level Data Organization for Efficient Scientific Analytics. MASCOTS (2012)
Weikuan Yu, Xinyu Que, Vinod Tipparaju, Jeffrey S. Vetter
HiCOO: Hierarchical cooperation for scalable communication in Global Address Space programming models on Cray XT systems. J. Parallel Distributed Comput. 72 (11) (2012)
Dong Li, Jeffrey S. Vetter, Weikuan Yu
Classifying soft error vulnerabilities in extreme-scale scientific applications using a binary instrumentation tool. SC (2012)
Vinod Tipparaju, Edoardo Aprà, Weikuan Yu, Xinyu Que, Jeffrey S. Vetter
Runtime Techniques to Enable a Highly-Scalable Global Address Space Model for Petascale Computing. Int. J. Parallel Program. 40 (6) (2012)
Dong Li, Jeffrey S. Vetter, Gabriel Marin, Collin McCurdy, Cristian Cira, Zhuo Liu, Weikuan Yu
Identifying Opportunities for Byte-Addressable Non-Volatile Memory in Extreme-Scale Scientific Applications. IPDPS (2012)
Yuan Tian, Weikuan Yu, Jeffrey S. Vetter
RXIO: Design and implementation of high performance RDMA-capable GridFTP. Comput. Electr. Eng. 38 (3) (2012)
Zhuo Liu, Bin Wang, Patrick Carpenter, Dong Li, Jeffrey S. Vetter, Weikuan Yu
PCM-Based Durable Write Cache for Fast Disk I/O. MASCOTS (2012)
Yandong Wang, Xinyu Que, Weikuan Yu, Dror Goldenberg, Dhiraj Sehgal
Hadoop acceleration through network levitated merge. SC (2011)
Xinyu Que, Weikuan Yu, Vinod Tipparaju, Jeffrey S. Vetter, Bin Wang
Network-Friendly One-Sided Communication through Multinode Cooperation on Petascale Cray XT5 Systems. CCGRID (2011)
Weikuan Yu, K. John Wu, Wei-Shinn Ku, Cong Xu, Juan Gao
BMF: Bitmapped Mass Fingerprinting for Fast Protein Identification. CLUSTER (2011)
Yuan Tian, Scott Klasky, Hasan Abbasi, Jay F. Lofstead, Ray W. Grout, Norbert Podhorszki, Qing Liu, Yandong Wang, Weikuan Yu
EDO: Improving Read Performance for Scientific Applications through Elastic Data Organization. CLUSTER (2011)
Weikuan Yu, Vinod Tipparaju, Xinyu Que, Jeffrey S. Vetter
Virtual Topologies for Scalable Resource Management and Contention Attenuation in a Global Address Space Model on the Cray XT5. ICPP (2011)
Zhuo Liu, Jian Zhou, Weikuan Yu, Fei Wu, Xiao Qin, Changsheng Xie
MIND: A black-box energy consumption model for disk arrays. IGCC (2011)
Vinod Tipparaju, Edoardo Aprà, Weikuan Yu, Jeffrey S. Vetter
Enabling a highly-scalable global address space model for petascale computing. Conf. Computing Frontiers (2010)
Weikuan Yu, Jeffrey S. Vetter
Initial characterization of parallel NFS implementations. IPDPS Workshops (2010)
Weikuan Yu, Yuan Tian, Jeffrey S. Vetter
Efficient Zero-Copy Noncontiguous I/O for Globus on InfiniBand. ICPP Workshops (2010)
Weikuan Yu, Xinyu Que, Vinod Tipparaju, Richard L. Graham, Jeffrey S. Vetter
Cooperative server clustering for a scalable GAS model on petascale cray XT5 systems. Comput. Sci. Res. Dev. 25 (1-2) (2010)
Weikuan Yu, Oleg Drokin, Jeffrey S. Vetter
Design, implementation, and evaluation of transparent pNFS on Lustre. IPDPS (2009)
Sadaf R. Alam, Richard F. Barrett, M. Bast, Mark R. Fahey, Jeffery A. Kuehn, Collin McCurdy, James H. Rogers, Philip C. Roth, Ramanan Sankaran, Jeffrey S. Vetter, Patrick H. Worley, Weikuan Yu
Early evaluation of IBM BlueGene/P. SC (2008)
Weikuan Yu, Jeffrey S. Vetter
Xen-Based HPC: A Parallel I/O Perspective. CCGRID (2008)
Weikuan Yu, Jeffrey S. Vetter, Sarp Oral
Performance characterization and optimization of parallel I/O on the Cray XT. IPDPS (2008)
Weikuan Yu, Nageswara S. V. Rao, Jeffrey S. Vetter
Experimental Analysis of InfiniBand Transport Services on WAN. NAS (2008)
Weikuan Yu, Sarp Oral, Shane Canon, Jeffrey S. Vetter, Ramanan Sankaran
Empirical Analysis of a Large-Scale Hierarchical Storage System. Euro-Par (2008)
Nageswara S. V. Rao, Weikuan Yu, William R. Wing, Stephen W. Poole, Jeffrey S. Vetter
Wide-area performance profiling of 10GigE and InfiniBand technologies. SC (2008)
Weikuan Yu, Jeffrey S. Vetter
ParColl: Partitioned Collective I/O on the Cray XT. ICPP (2008)
Jeffrey S. Vetter, Vinod Tipparaju, Weikuan Yu, Philip C. Roth
HPC Interconnection Networks: The Key to Exascale Computing. High Performance Computing Workshop (2008)
Feng Chen, Song Jiang, Weisong Shi, Weikuan Yu
FlexFetch: A History-Aware Scheme for I/O Energy Saving in Mobile Computing. ICPP (2007)
Weikuan Yu, Jeffrey S. Vetter, Shane Canon, Song Jiang
Exploiting Lustre File Joining for Effective Collective IO. CCGRID (2007)
Shuang Liang, Weikuan Yu, Dhabaleswar K. Panda
High Performance Block I/O for Global File System (GFS) with InfiniBand RDMA. ICPP (2006)
Weikuan Yu, Ranjit Noronha, Shuang Liang, Dhabaleswar K. Panda
Benefits of high speed interconnects to cluster file systems: a case study with Lustre. IPDPS (2006)
Qi Gao, Weikuan Yu, Wei Huang, Dhabaleswar K. Panda
Application-Transparent Checkpoint/Restart for MPI Programs over InfiniBand. ICPP (2006)
Weikuan Yu, Qi Gao, Dhabaleswar K. Panda
Adaptive connection management for scalable MPI over InfiniBand. IPDPS (2006)
Pavan Balaji, Wu-chun Feng, Qi Gao, Ranjit Noronha, Weikuan Yu, Dhabaleswar K. Panda
Head-to-TOE Evaluation of High-Performance Sockets over Protocol Offload Engines. CLUSTER (2005)
Weikuan Yu, Shuang Liang, Dhabaleswar K. Panda
High performance support of parallel virtual file system (PVFS2) over Quadrics. ICS (2005)

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Publication Activity (10 Years)

Top Topics

Top Venues

Weikuan Yu