Lizhen Shi

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 5

Top Topics

Clustering Algorithm

Vector Representation

Completely Unsupervised

Top Venues

Publications

Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu
DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models. CoRR (2024)
Lizhen Shi, Bo Chen
LSHvec: a vector representation of DNA sequences using locality sensitive hashing and FastText word embeddings. BCB (2021)
Lizhen Shi, Bo Chen
Comparison and Benchmark of Graph Clustering Algorithms. CoRR (2020)
Lizhen Shi, Xiandong Meng, Elizabeth Tseng, Michael Mascagni, Zhong Wang
SpaRC: scalable sequence clustering using Apache Spark. Bioinform. 35 (5) (2019)
Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng
A case study of tuning MapReduce for efficient Bioinformatics in the cloud. Parallel Comput. 61 (2017)
Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng
Performance evaluation and tuning of BioPig for genomic analysis. DISCS@SC (2015)