Edward C. Uberbacher

Publication Activity (10 Years)

Years Active: 1991-2016
Publications (10 Years): 1

Top Topics

Gene Expression Levels

Protein Families

Genomic Sequences

Top Venues

PLoS Comput. Biol.

Publications

Steven W. Paugh, David R. Coss, Ju Bao, Lucas T. Laudermilk, Christy R. Grace, Antonio M. Ferreira, M. Brett Waddell, Granger Ridout, Deanna Naeve, Michael R. Leuze, Philip F. LoCascio, John C. Panetta, Mark R. Wilkinson, Ching-Hon Pui, Clayton W. Naeve, Edward C. Uberbacher, Erik J. Bonten, William E. Evans
MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression. PLoS Comput. Biol. 12 (2) (2016)
Doug Hyatt, Philip F. LoCascio, Loren J. Hauser, Edward C. Uberbacher
Gene and translation initiation site prediction in metagenomic sequences. Bioinform. 28 (17) (2012)
Mustafa H. Syed, Tatiana V. Karpinets, Morey Parang, Michael R. Leuze, Byung-Hoon Park, Doug Hyatt, Steven D. Brown, Steve Moulton, Michael D. Galloway, Edward C. Uberbacher
BESC knowledgebase public portal. Bioinform. 28 (5) (2012)
Tatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher
knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. Database J. Biol. Databases Curation 2010 (2010)
Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB (2003)
Chandrasegaran Narasimhan, Philip F. LoCascio, Edward C. Uberbacher
Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection. Bioinform. 19 (15) (2003)
Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier
Computing for the DOE Genomes to Life Program. CSB (2003)
Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher
Stepping Up the Pace of Discovery: the Genomes to Life Program. CSB (2003)
Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher
Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinform. 16 (3) (2000)
Ying Xu, Dong Xu, Edward C. Uberbacher
An Efficient Computational Method for Globally Optimal Threading. J. Comput. Biol. 5 (3) (1998)
Ying Xu, Dong Xu, Edward C. Uberbacher
A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB (1998)
Ying Xu, Victor Olman, Edward C. Uberbacher
A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognit. Lett. 19 (13) (1998)
Ying Xu, Edward C. Uberbacher
2D image segmentation using minimum spanning trees. Image Vis. Comput. 15 (1) (1997)
Ying Xu, Richard J. Mural, Edward C. Uberbacher
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB (1997)
Ying Xu, Edward C. Uberbacher
Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB (1997)
Ying Xu, Edward C. Uberbacher
Automated Gene Identification in Large-Scale Genomic Sequences. J. Comput. Biol. 4 (3) (1997)
Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher
GRAIL: a multi-agent neural network system for gene identification. Proc. IEEE 84 (10) (1996)
Ying Xu, Edward C. Uberbacher
A polynomial-time algorithm for a class of protein threading problems. Comput. Appl. Biosci. 12 (6) (1996)
Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher
Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Comput. Chem. 20 (1) (1996)
Xiaojun Guan, Edward C. Uberbacher
Alignments of DNA and protein sequences containing frameshift errors. Comput. Appl. Biosci. 12 (1) (1996)
Ying Xu, Richard J. Mural, Edward C. Uberbacher
An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. J. Comput. Biol. 3 (3) (1996)
Ying Xu, Edward C. Uberbacher
Gene Prediction by Pattern Recognition and Homology Search. ISMB (1996)
Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher
Predicting Protein Folding Classes without Overly Relying on Homology. ISMB (1995)
Ying Xu, Richard J. Mural, Edward C. Uberbacher
Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Comput. Appl. Biosci. 11 (2) (1995)
Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher
Sequence comparison on a cluster of workstations using the PVM system. IPPS (1995)
Sherri Matis, Howard Doyle, Ignazio Marino, Richard J. Mural, Edward C. Uberbacher
Use of Neural Networks for Prediction of Graft Failure following Liver Transplantation. CBMS (1995)
Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence. ISMB (1994)
Ying Xu, Richard J. Mural, Edward C. Uberbacher
Constructing gene models from accurately predicted exons: an application of dynamic programming. Comput. Appl. Biosci. 10 (6) (1994)
Xiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher
On Parallel Search of DNA Sequence Databases. PPSC (1991)