Bahram Parvin

ORCID

Publication Activity (10 Years)

Years Active: 1987-2021
Publications (10 Years): 22

Top Venues

ISBI

Bioinform.

CVPR

IEEE Trans. Biomed. Eng.

Publications

Garrett Winkelmaier, Bahram Parvin
An enhanced loss function simplifies the deep learning model for characterizing the 3D organoid models. Bioinform. 37 (18) (2021)
Garrett Winkelmaier, Rushikesh Battulwar, Mina Khoshdeli, Jorge Valencia, Javad Sattarvand, Bahram Parvin
Topographically Guided UAV for Identifying Tension Cracks Using Image-Based Analytics in Open-Pit Mines. IEEE Trans. Ind. Electron. 68 (6) (2021)
Qingsu Cheng, Mina Khoshdeli, Bradley S. Ferguson, Kosar Jabbari, Chongzhi Zang, Bahram Parvin
YY1 is a cis-regulator in the organoid models of high mammographic density. Bioinform. 36 (6) (2020)
Rushikesh Battulwar, Garrett Winkelmaier, Jorge Valencia, Masoud Zare Naghadehi, Bijan Peik, Behrooz Abbasi, Bahram Parvin, Javad Sattarvand
A Practical Methodology for Generating High-Resolution 3D Models of Open-Pit Slopes Using UAVs: Flight Path Planning and Optimization. Remote. Sens. 12 (14) (2020)
Qingsu Cheng, Bahram Parvin
Organoid model of mammographic density displays a higher frequency of aberrant colony formations with radiation exposure. Bioinform. 36 (7) (2020)
Mina Khoshdeli, Garrett Winkelmaier, Bahram Parvin
Deep fusion of contextual and object-based representations for delineation of multiple nuclear phenotypes. Bioinform. 35 (22) (2019)
Mina Khoshdeli, Alexander Borowsky, Bahram Parvin
Deep Learning Models Differentiate Tumor Grades from H&E Stained Histology Sections. EMBC (2018)
Garrett Winkelmaier, Mina Khoshdeli, Qingsu Cheng, Alexander Borowsky, Bahram Parvin
Quantum cascade laser infrared microscopy differentiates malignant phenotypes in breast histology sections. ISBI (2018)
Mina Khoshdeli, Garrett Winkelmaier, Bahram Parvin
Multilayer Encoder-Decoder Network for 3D Nuclear Segmentation in Spheroid Models of Human Mammary Epithelial Cell Lines. CVPR Workshops (2018)
Mina Khoshdeli, Bahram Parvin
Deep Learning Models Delineates Multiple Nuclear Phenotypes in H&E Stained Histology Sections. CoRR (2018)
Mina Khoshdeli, Bahram Parvin
Feature-Based Representation Improves Color Decomposition and Nuclear Detection Using a Convolutional Neural Network. IEEE Trans. Biomed. Eng. 65 (3) (2018)
Mina Khoshdeli, Richard Cong, Bahram Parvin
Detection of nuclei in H&E stained sections using convolutional neural networks. BHI (2017)
Cheng Zhong, Ju Han, Alexander Borowsky, Bahram Parvin, Yunfu Wang, Hang Chang
When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections. Medical Image Anal. 35 (2017)
Ju Han, Yunfu Wang, Weidong Cai, Alexander Borowsky, Bahram Parvin, Hang Chang
Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. MICCAI (1) (2016)
Hang Chang, Yin Zhou, Alexander Borowsky, Kenneth E. Barner, Paul T. Spellman, Bahram Parvin
Stacked Predictive Sparse Decomposition for Classification of Histology Sections. Int. J. Comput. Vis. 113 (1) (2015)
Hang Chang, Bahram Parvin
Classification of 3D Multicellular Organization in Phase Microscopy for High Throughput Screening of Therapeutic Targets. WACV (2015)
Dinggang Shen, Daoqiang Zhang, Alastair Young, Bahram Parvin
EditorialMachine Learning and Data Mining in Medical Imaging. IEEE J. Biomed. Health Informatics 19 (5) (2015)
Michael T. McCann, John A. Ozolek, Carlos A. Castro, Bahram Parvin, Jelena Kovacevic
Automated Histology Analysis: Opportunities for signal processing. IEEE Signal Process. Mag. 32 (1) (2015)
Yin Zhou, Hang Chang, Kenneth E. Barner, Bahram Parvin
Nuclei segmentation via sparsity constrained convolutional regression. ISBI (2015)
Hang Chang, Quan Wen, Bahram Parvin
Coupled segmentation of nuclear and membrane-bound macromolecules through voting and multiphase level set. Pattern Recognit. 48 (3) (2015)
Hang Chang, Paul T. Spellman, Bahram Parvin
Predictive sparse morphometric context for classification of histology sections. ISBI (2015)
Kai Zhang, Liang Lan, James T. Kwok, Slobodan Vucetic, Bahram Parvin
Scaling Up Graph-Based Semisupervised Learning via Prototype Vector Machines. IEEE Trans. Neural Networks Learn. Syst. 26 (3) (2015)
Yin Zhou, Hang Chang, Kenneth E. Barner, Paul T. Spellman, Bahram Parvin
Classification of Histology Sections via Multispectral Convolutional Sparse Coding. CVPR (2014)
Nandita Nayak, Hang Chang, Alexander Borowsky, Paul T. Spellman, Bahram Parvin
Classification of tumor histopathology via sparse feature learning. ISBI (2013)
Nandita Nayak, Hang Chang, Alexander Borowsky, Paul T. Spellman, Bahram Parvin
Classification of tumor histopathology via sparse feature learning. ISBI (2013)
Hang Chang, Alexander Borowsky, Paul T. Spellman, Bahram Parvin
Classification of Tumor Histology via Morphometric Context. CVPR (2013)
Hang Chang, Ju Han, Alexander Borowsky, Leandro A. Loss, Joe W. Gray, Paul T. Spellman, Bahram Parvin
Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. IEEE Trans. Medical Imaging 32 (4) (2013)
Hang Chang, Nandita Nayak, Paul T. Spellman, Bahram Parvin
Characterization of Tissue Histopathology via Predictive Sparse Decomposition and Spatial Pyramid Matching. MICCAI (2) (2013)
Cemal Çagatay Bilgin, Sun Kim, Elle Leung, Hang Chang, Bahram Parvin
Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinform. 29 (23) (2013)
Hang Chang, Yin Zhou, Paul T. Spellman, Bahram Parvin
Stacked Predictive Sparse Coding for Classification of Distinct Regions in Tumor Histopathology. ICCV (2013)
Hang Chang, Leandro A. Loss, Paul T. Spellman, Alexander Borowsky, Bahram Parvin
Batch-invariant nuclear segmentation in whole mount histology sections. ISBI (2012)
Hang Chang, Ju Han, Paul T. Spellman, Bahram Parvin
Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme. IEEE Trans. Biomed. Eng. 59 (12) (2012)
Quoc V. Le, Ju Han, Joe W. Gray, Paul T. Spellman, Alexander Borowsky, Bahram Parvin
Learning invariant features of tumor signatures. ISBI (2012)
Leandro A. Loss, George Bebis, Hang Chang, Manfred Auer, Purbasha Sarkar, Bahram Parvin
Automatic segmentation and quantification of filamentous structures in electron tomography. BCB (2012)
Leandro A. Loss, Hang Chang, Purbasha Sarkar, Manfred Auer, Bahram Parvin
Detection of 3D filamentous networks from tomographic electron microscopy. ISBI (2012)
Ju Han, Hang Chang, Gerald Fontenay, Paul T. Spellman, Alexander Borowsky, Bahram Parvin
Molecular bases of morphometric composition in Glioblastoma multiforme. ISBI (2012)
Leandro A. Loss, George Bebis, Bahram Parvin
Iterative Tensor Voting for Perceptual Grouping of Ill-Defined Curvilinear Structures. IEEE Trans. Medical Imaging 30 (8) (2011)
Hang Chang, Gerald Fontenay, Ju Han, Ge Cong, Frederick L. Baehner, Joe W. Gray, Paul T. Spellman, Bahram Parvin
Morphometic analysis of TCGA glioblastoma multiforme. BMC Bioinform. 12 (2011)
Ju Han, Hang Chang, Leandro A. Loss, Kai Zhang, Frederick L. Baehner, Joe W. Gray, Paul T. Spellman, Bahram Parvin
Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. ISBI (2011)
Ju Han, Seema Singh, Lan Sun, Blake A. Simmons, Manfred Auer, Bahram Parvin
Chemical profiling of the plant cell wall through Raman microspectroscopy. ISBI (2010)
Leandro A. Loss, Anguraj Sadanandam, Steffen Durinck, Shivani Nautiya, Diane Flaucher, Victoria E. H. Carlton, Martin Moorhead, Yontao Lu, Joe W. Gray, Malek Faham, Paul T. Spellman, Bahram Parvin
Prediction of epigenetically regulated genes in breast cancer cell lines. BMC Bioinform. 11 (2010)
Katarzyna A. Rejniak, Shizhen E. Wang, Nicole S. Bryce, Hang Chang, Bahram Parvin, Jerome Jourquin, Lourdes Estrada, Joe W. Gray, Carlos L. Arteaga, Alissa M. Weaver, Vito Quaranta, Alexander R. A. Anderson
Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling. PLoS Comput. Biol. 6 (8) (2010)
Ju Han, Hang Chang, Orsi Giricz, Genee Y. Lee, Frederick L. Baehner, Joe W. Gray, Mina J. Bissell, Paraic A. Kenny, Bahram Parvin
Molecular Predictors of 3D Morphogenesis by Breast Cancer Cell Lines in 3D Culture. PLoS Comput. Biol. 6 (2) (2010)
Hang Chang, Bahram Parvin
Multiphase level set for automated delineation of membrane-bound macromolecules. ISBI (2010)
Ju Han, Hang Chang, Kumari L. Andarawewa, Paul Yaswen, Mary Helen Barcellos-Hoff, Bahram Parvin
Multidimensional Profiling of Cell Surface Proteins and Nuclear Markers. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Kai Zhang, Joe W. Gray, Bahram Parvin
Sparse multitask regression for identifying common mechanism of response to therapeutic targets. Bioinform. 26 (12) (2010)
Quan Wen, Hang Chang, Bahram Parvin
A Delaunay Triangulation Approach for Segmenting Clumps of Nuclei. ISBI (2009)
Ju Han, Hang Chang, Gerald Fontenay, Nicholas J. Wang, Joe W. Gray, Bahram Parvin
Morphometric Subtyping for a Panel of Breast Cancer Cell Lines. ISBI (2009)
Leandro A. Loss, George Bebis, Bahram Parvin
Tunable Tensor Voting for Regularizing Punctate Patterns of Membrane-Bound Protein Signals. ISBI (2009)
Hang Chang, Manfred Auer, Bahram Parvin
Structural Annotation of EM Images by Graph Cut. ISBI (2009)
Hang Chang, Rosa Anna DeFilippis, Thea D. Tlsty, Bahram Parvin
Graphical methods for quantifying macromolecules through bright field imaging. Bioinform. 25 (8) (2009)
Kai Zhang, James T. Kwok, Bahram Parvin
Prototype vector machine for large scale semi-supervised learning. ICML (2009)
Leandro A. Loss, George Bebis, Bahram Parvin
Tunable tensor voting improves grouping of membrane-bound macromolecules. CVPR Workshops (2009)
Ju Han, Hang Chang, Kumari L. Andarawewa, Paul Yaswen, Mary Helen Barcellos-Hoff, Bahram Parvin
Integrated profiling of cell surface protein and nuclear marker for discriminant analysis. ISBI (2008)
Hang Chang, Qing Yang, Bahram Parvin
A Bayesian approach for image segmentation with shape priors. CVPR (2008)
Ju Han, Hang Chang, Qing Yang, Mary Helen Barcellos-Hoff, Bahram Parvin
Segmentation of Mammosphere Structures from Volumetric Data. ISBI (2007)
Bahram Parvin, Qing Yang, Ju Han, Hang Chang, Bjorn Rydberg, Mary Helen Barcellos-Hoff
Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events. IEEE Trans. Image Process. 16 (3) (2007)
Hang Chang, Kumari L. Andarawewa, Ju Han, Mary Helen Barcellos-Hoff, Bahram Parvin
Perceptual Grouping of Membrane Signals in Cell-Based Assays. ISBI (2007)
Hang Chang, Qing Yang, Manfred Auer, Bahram Parvin
Modeling of Front Evolution with Graph Cut Optimization. ICIP (1) (2007)
Hang Chang, Qing Yang, Bahram Parvin
Segmentation of heterogeneous blob objects through voting and level set formulation. Pattern Recognit. Lett. 28 (13) (2007)
Hang Chang, Catherine Park, Bahram Parvin
Quantitative Representation of Three-dimensional Cell Culture Models. ISBI (2007)
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merrill Knapp, Carolyn L. Talcott, Keith Laderoute, Joe W. Gray, Paul T. Spellman
Spectral Decomposition of Signaling Networks. CIBCB (2007)
Hang Chang, Bahram Parvin
Segmentation of Three Dimensional Cell Culture Models from a Single Focal Plane. ISVC (2) (2006)
Ju Han, Hang Chang, Qing Yang, Mary Helen Barcellos-Hoff, Bahram Parvin
3D Segmentation of Mammospheres for Localization Studies. ISVC (1) (2006)
S. Raman, Bahram Parvin, Christopher Maxwell, Mary Helen Barcellos-Hoff
Geometric Approach to Segmentation and Protein Localization in Cell Cultured Assays. ISVC (2005)
Ge Cong, Mehmet Esser, Bahram Parvin, George Bebis
Shape Metamorphism using p-Laplacian Equation. ICPR (4) (2004)
Qing Yang, Bahram Parvin
Perceptual Organization of Radial Symmetries. CVPR (1) (2004)
Qing Yang, Bahram Parvin, Mary Helen Barcellos-Hoff
Localization of Saliency through Iterative Voting. ICPR (1) (2004)
Qing Yang, Bahram Parvin
High-resolution reconstruction of sparse data from dense low-resolution spatio-temporal data. IEEE Trans. Image Process. 12 (6) (2003)
Qing Yang, Bahram Parvin
Harmonic cut and regularized centroid transform for localization of subcellular structures. IEEE Trans. Biomed. Eng. 50 (4) (2003)
Bahram Parvin, Qing Yang, Gerald Fontenay, Mary Helen Barcellos-Hoff
BioSig: an imaging bioinformatics system for phenotypic analysis. IEEE Trans. Syst. Man Cybern. Part B 33 (5) (2003)
Bahram Parvin, Qing Yang, Gerald Fontenay, Mary Helen Barcellos-Hoff
BioSig: An Imaging Bioinformatic System for Studying Phenomic. Computer 35 (7) (2002)
Qing Yang, Bahram Parvin
CHEF: Convex Hull of Elliptic Features for 3D Blob Detection. ICPR (2) (2002)
Qing Yang, Bahram Parvin
High-Resolution Reconstruction of Sparse Data from Dense Low-Resolution Spatio-Temporal Data. ICPR (2) (2002)
Qing Yang, Bahram Parvin
Harmonic Cut and Regularized Centroid Transform for Localization of Subcellular Structures. ICPR (1) (2002)
Bahram Parvin, Gerald Fontenay, John R. Taylor, Daniel E. Callahan
Declarative Flow Control for Distributed Instrumentation. CCGRID (2001)
Ge Cong, Bahram Parvin
Robust and efficient surface reconstruction from contours. Vis. Comput. 17 (4) (2001)
Ge Cong, Bahram Parvin
Shape Recovery from Equal Thickness Contours. IEEE Trans. Pattern Anal. Mach. Intell. 22 (9) (2000)
Qing Yang, Bahram Parvin, Arthur Mariano
Singular Features in Sea Surface Temperature Data. ICPR (2000)
Bahram Parvin, Ge Cong, Gerald Fontenay, John R. Taylor, R. Henshal, Mary Helen Barcellos-Hoff
BioSig: A Bioinformatic System for Studying the Mechanism of Intra-Cell Signaling. BIBE (2000)
Ge Cong, Bahram Parvin
Model-based segmentation of nuclei. Pattern Recognit. 33 (8) (2000)
Qing Yang, Bahram Parvin
Feature Based Visualization of Geophysical Data. CVPR (2000)
Ge Cong, Bahram Parvin
A New Regularized Approach for Contour Morphing. CVPR (2000)
Ge Cong, Bahram Parvin
Surface Recovery from Planar Sectional Contours. ICPR (2000)
Ge Cong, Bahram Parvin
An Algebraic Solution to Surface Recovery from Cross-Sectional Contours. Graph. Model. Image Process. 61 (4) (1999)
Bahram Parvin, John R. Taylor, Ge Cong, M. A. O'Keefe, Mary Helen Barcellos-Hoff
DeepView: A Channel for Distributed Microscopy and Informatics. SC (1999)
Bahram Parvin, John R. Taylor, Ge Cong
DeepView: A Channel for Distributed Microscopy. DOA (1999)
Ge Cong, Bahram Parvin
Model Based Segmentation of Nuclei. CVPR (1999)
Ge Cong, Bahram Parvin
Curve evolution for corner enhancement. ICPR (1998)
Ge Cong, Bahram Parvin
Shape from interference patterns. ICPR (1998)
Ge Cong, Bahram Parvin
Surface reconstruction from sparse fringe contours. WACV (1998)
Ge Cong, Bahram Parvin
Shape from Equal Thickness Contours. CVPR (1998)
Bahram Parvin, John R. Taylor, Ge Cong
A Collaborative Framework for Distributed Microscopy. SC (1998)
Bahram Parvin, John R. Taylor, Daniel E. Callahan, William E. Johnston, Ulrich Dahmen
Visual Servoing for Online Facilities. Computer 30 (7) (1997)
Bahram Parvin, Daniel E. Callahan, William E. Johnston, Marcos Maestre
Visual servoing for micro-manipulation. ICPR (1996)
Bahram Parvin, Gérard G. Medioni
B-rep object description from multiple range views. Int. J. Comput. Vis. 20 (1-2) (1996)
Bahram Parvin, John R. Taylor, Brian Crowley, L. Wu, William E. Johnston, D. Owen, M. A. O'Keefe, Ulrich Dahman
Telepresence for In-situ Microscopy. ICMCS (1996)
Bahram Parvin, C. Peng, William E. Johnston, Marcos Maestre
Tracking of Tubular Molecules for Scientific Applications. IEEE Trans. Pattern Anal. Mach. Intell. 17 (8) (1995)
Bahram Parvin, Carrie Johnston, Marcos Maestre
Tracking of tubular objects for scientific applications. CVPR (1994)
Bahram Parvin, William E. Johnston, D. Roselli
Pinta: a system for visualizing the anatomical structures of the brain from MR imaging. CVPR (1993)

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Publication Activity (10 Years)

Top Topics

Top Venues

Bahram Parvin