Merrill Knapp

Publication Activity (10 Years)

Years Active: 2002-2020
Publications (10 Years): 9

Top Topics

Incomplete Information

Causal Networks

Top Venues

Publications

Adrián Riesco, Beatriz Santos-Buitrago, Merrill Knapp, Gustavo Santos-García, Emiliano Hernández Galilea, Carolyn L. Talcott
Fuzzy Matching for Cellular Signaling Networks in a Choroidal Melanoma Model. PACBB (2020)
Mark-Oliver Stehr, Minyoung Kim, Carolyn L. Talcott, Merrill Knapp, Akos Vertes
Probabilistic Approximate Logic and its Implementation in the Logical Imagination Engine. CoRR (2019)
Beatriz Santos-Buitrago, Adrián Riesco, Merrill Knapp, José Carlos R. Alcantud, Gustavo Santos-García, Carolyn L. Talcott
Soft Set Theory for Decision Making in Computational Biology Under Incomplete Information. IEEE Access 7 (2019)
Mark-Oliver Stehr, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky, Akos Vertes
Learning Causality: Synthesis of Large-Scale Causal Networks from High-Dimensional Time Series Data. CoRR (2019)
Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky
Transcriptional Response of SK-N-AS Cells to Methamidophos. CoRR (2019)
Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky
Transcriptional Response of SK-N-AS Cells to Methamidophos (Extended Abstract). CMSB (2019)
Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Hang Li, Peter Nemes, Lida Parvin, Sylwia Stopka, Sunil Hwang, Ziad J. Sahab, Linwen Zhang, Deborah I. Bunin, Merrill Knapp, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Sean R. Dinn, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky
Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data. CMSB (2018)
Carolyn L. Talcott, Merrill Knapp
Explaining Response to Drugs Using Pathway Logic. CMSB (2017)
Beatriz Santos-Buitrago, Adrián Riesco, Merrill Knapp, Gustavo Santos-García, Carolyn L. Talcott
Reverse Inference in Symbolic Systems Biology. PACBB (2017)
Vivek Nigam, Robin Donaldson, Merrill Knapp, Tim McCarthy, Carolyn L. Talcott
Inferring Executable Models from Formalized Experimental Evidence. CMSB (2015)
Anupama Panikkar, Merrill Knapp, Huaiyu Mi, Dave Anderson, Krishna Kodukula, Amit K. Galande, Carolyn L. Talcott
Applications of Pathway Logic Modeling to Target Identification. Formal Modeling: Actors, Open Systems, Biological Systems (2011)
Robin Donaldson, Carolyn L. Talcott, Merrill Knapp, Muffy Calder
Understanding signalling networks as collections of signal transduction pathways. CMSB (2010)
Ashish Tiwari, Carolyn L. Talcott, Merrill Knapp, Patrick Lincoln, Keith Laderoute
Analyzing Pathways Using SAT-Based Approaches. AB (2007)
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merrill Knapp, Carolyn L. Talcott, Keith Laderoute, Joe W. Gray, Paul T. Spellman
Spectral Decomposition of Signaling Networks. CIBCB (2007)
David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln
The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways. Systems Biology and Regulatory Genomics (2005)
Merrill Knapp, Linda Briesemeister, Steven Eker, Patrick Lincoln, Andy Poggio, Carolyn L. Talcott, Keith Laderoute
Pathway Logic Helping Biologists Understand and Organize Pathway Information. CSB Workshops (2005)
Carolyn L. Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, Keith Laderoute
Pathway Logic Modeling of Protein Functional Domains in Signal Transduction. Pacific Symposium on Biocomputing (2004)
Carolyn L. Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, Keith Laderoute
Pathway Logic Modeling of Protein Functional Domains in Signal Transduction. CSB (2003)
Steven Eker, Merrill Knapp, Keith Laderoute, Patrick Lincoln, Carolyn L. Talcott
Pathway Logic: Executable Models of Biological Networks. Electron. Notes Theor. Comput. Sci. 71 (2002)
Steven Eker, Merrill Knapp, Keith Laderoute, Patrick Lincoln, José Meseguer, M. Kemal Sönmez
Pathway Logic: Symbolic Analysis of Biological Signaling. Pacific Symposium on Biocomputing (2002)