Martin Maska

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 12

Top Topics

Fluorescence Microscopy

Automatic Tracking

Top Venues

IEEE Trans. Medical Imaging

Publications

Lucia Hradecká, David Wiesner, Jakub Sumbal, Zuzana Sumbalova Koledova, Martin Maska
Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy. IEEE Trans. Medical Imaging 42 (1) (2023)
Ulysse Rubens, Romain Mormont, Lassi Paavolainen, Volker Bäcker, Benjamin Pavie, Leandro A. Scholz, Gino Michiels, Martin Maska, Devrim Ünay, Graeme Ball, Renaud Hoyoux, Rémy Vandaele, Ofra Golani, Stefan G. Stanciu, Natasa Sladoje, Perrine Paul-Gilloteaux, Raphaël Marée, Sébastien Tosi
BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows. Patterns 1 (3) (2020)
Martin Maska, Tereza Necasová, David Wiesner, Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda
Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. ICIP (2019)
Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Trans. Medical Imaging 38 (3) (2019)
David Wiesner, David Svoboda, Martin Maska, Michal Kozubek
CytoPacq: a web-interface for simulating multi-dimensional cell imaging. Bioinform. 35 (21) (2019)
Cem Emre Akbas, Vladimír Ulman, Martin Maska, Florian Jug, Michal Kozubek
Automatic Fusion of Segmentation and Tracking Labels. ECCV Workshops (6) (2018)
Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda, Tereza Necasová, Katsiarina Morgaenko, Lívia Eiselleová, Lenka Tesarová, Martin Maska
FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells With Growing and Branching Filopodia. IEEE Trans. Medical Imaging 37 (12) (2018)
Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks. ISBI (2018)
Igor Peterlík, David Svoboda, Vladimír Ulman, Dmitry V. Sorokin, Martin Maska
Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. SASHIMI@MICCAI (2018)
Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda, Martin Maska
Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia. ISBI (2017)
Martin Maska, Pavel Matula
Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. ICCV Workshops (2017)
Karel Stepka, Martin Maska, Jakub Jozef Pálenik, Vendula Pospíchalová, Anna Kotrbová, Ladislav Ilkovics, Dobromila Klemová, Ales Hampl, Vítezslav Bryja, Pavel Matula
Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. ECCV Workshops (1) (2016)
Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
Quantification of the 3D collagen network geometry in confocal reflection microscopy. ICIP (2015)
María Anguiano, Carlos Castilla, Martin Maska, Cristina Ederra, Javier Fernández-Marqués, Rafael Peláez, Ana Rouzaut, Arrate Muñoz-Barrutia, Michal Kozubek, Carlos Ortiz-de-Solorzano
Characterization of the role of collagen network structure and composition in cancer cell migration. EMBC (2015)
David Svoboda, Vladimír Ulman, Ludek Matyska, Martin Maska, Jan Bella, Stanislav Stejskal
On proper simulation of phenomena influencing image formation in fluorescence microscopy. ICIP (2014)
Martin Maska, Vladimír Ulman, David Svoboda, Pavel Matula, Petr Matula, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan, Deepak M. W. Balak, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén, Helen M. Blau, Oleh Dzyubachyk, Pavel Krízek, Guy M. Hagen, David Pastor-Escuredo, Daniel Jimenez-Carretero, María J. Ledesma-Carbayo, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek, Carlos Ortiz-de-Solorzano
A benchmark for comparison of cell tracking algorithms. Bioinform. 30 (11) (2014)
Martin Maska, Ondrej Danek, Saray Garasa, Ana Rouzaut, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Trans. Medical Imaging 32 (6) (2013)
Martin Maska, Xabier Morales, Arrate Muñoz-Barrutia, Ana Rouzaut, Carlos Ortiz-de-Solorzano
Automatic quantification of filopodia-based cell migration. ISBI (2013)
Ondrej Danek, Pavel Matula, Martin Maska, Michal Kozubek
Smooth Chan-Vese segmentation via graph cuts. Pattern Recognit. Lett. 33 (10) (2012)
Martin Maska, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
Fast tracking of fluorescent cells based on the Chan-Vese model. ISBI (2012)
Martin Maska, Pavel Matula, Michal Kozubek
Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. MEMICS (2010)
Ondrej Danek, Martin Maska
A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. MEMICS (2010)
Martin Maska, Pavel Matula, Ondrej Danek, Michal Kozubek
A Fast Level Set-Like Algorithm for Region-Based Active Contours. ISVC (3) (2010)
Martin Maska, Pavel Matula
A Fast Level Set-Like Algorithm with Topology Preserving Constraint. CAIP (2009)
Ondrej Danek, Pavel Matula, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Martin Maska, Michal Kozubek
Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. SCIA (2009)
Pavel Matula, Martin Maska, Ondrej Danek, Petr Matula, Michal Kozubek
Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. ISBI (2009)
Martin Maska, Ondrej Danek, Carlos Ortiz-de-Solorzano, Arrate Muñoz-Barrutia, Michal Kozubek, Ignacio Fernández García
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. SCIA (2009)
David Svoboda, Marek Kasík, Martin Maska, Jan Hubený, Stanislav Stejskal, Michal Zimmermann
On Simulating 3D Fluorescent Microscope Images. CAIP (2007)
Martin Maska, Jan Hubený, David Svoboda, Michal Kozubek
A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. ISVC (2) (2007)