Javier Setoain

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 8

Top Topics

Benchmark Suite

Sequence Analysis

Sequence Alignment

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Lorién López-Villellas, Rubén Langarita-Benítez, Asaf Badouh, Víctor Soria Pardos, Quim Aguado-Puig, Guillem López-Paradís, Max Doblas, Javier Setoain, Chulho Kim, Makoto Ono, Adrià Armejach, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó
GenArchBench: A genomics benchmark suite for arm HPC processors. Future Gener. Comput. Syst. 157 (2024)
Rubén Langarita, Adrià Armejach, Javier Setoain, Pablo Ibáñez-Marín, Jesús Alastruey-Benedé, Miquel Moretó
Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-Steps. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Jason Lowe-Power, Abdul Mutaal Ahmad, Ayaz Akram, Mohammad Alian, Rico Amslinger, Matteo Andreozzi, Adrià Armejach, Nils Asmussen, Srikant Bharadwaj, Gabe Black, Gedare Bloom, Bobby R. Bruce, Daniel Rodrigues Carvalho, Jerónimo Castrillón, Lizhong Chen, Nicolas Derumigny, Stephan Diestelhorst, Wendy Elsasser, Marjan Fariborz, Amin Farmahini Farahani, Pouya Fotouhi, Ryan Gambord, Jayneel Gandhi, Dibakar Gope, Thomas Grass, Bagus Hanindhito, Andreas Hansson, Swapnil Haria, Austin Harris, Timothy Hayes, Adrian Herrera, Matthew Horsnell, Syed Ali Raza Jafri, Radhika Jagtap, Hanhwi Jang, Reiley Jeyapaul, Timothy M. Jones, Matthias Jung, Subash Kannoth, Hamidreza Khaleghzadeh, Yuetsu Kodama, Tushar Krishna, Tommaso Marinelli, Christian Menard, Andrea Mondelli, Tiago Mück, Omar Naji, Krishnendra Nathella, Hoa Nguyen, Nikos Nikoleris, Lena E. Olson, Marc S. Orr, Binh Pham, Pablo Prieto, Trivikram Reddy, Alec Roelke, Mahyar Samani, Andreas Sandberg, Javier Setoain, Boris Shingarov, Matthew D. Sinclair, Tuan Ta, Rahul Thakur, Giacomo Travaglini, Michael Upton, Nilay Vaish, Ilias Vougioukas, Zhengrong Wang, Norbert Wehn, Christian Weis, David A. Wood, Hongil Yoon, Éder F. Zulian
The gem5 Simulator: Version 20.0+. CoRR (2020)
Javier Setoain, Alejandro Chacón, Filippo Spiga
Simulating SVE-Optimised Genomics Workloads on Gem5. CLUSTER (2018)
Ariel Oleksiak, Michal Kierzynka, Wojciech Piatek, Giovanni Agosta, Alessandro Barenghi, Carlo Brandolese, William Fornaciari, Gerardo Pelosi, Mariano Cecowski, Robert Plestenjak, Justin Cinkelj, Mario Porrmann, Jens Hagemeyer, René Griessl, Jan Lachmair, Meysam Peykanu, Lennart Tigges, Micha vor dem Berge, Wolfgang Christmann, Stefan Krupop, Alexandre Carbon, Loïc Cudennec, Thierry Goubier, Jean-Marc Philippe, Sven Rosinger, Daniel Schlitt, Christian Pieper, Chris Adeniyi-Jones, Javier Setoain, Luca Ceva, Udo Janssen
M2DC - Modular Microserver DataCentre with heterogeneous hardware. Microprocess. Microsystems 52 (2017)
Javier Setoain, Mònica Franch, Marta Martínez, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, Annette Bakker, Eduardo Gonzalez-Couto, Juan Elvira, Alberto D. Pascual-Montano
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Iñigo Marcos-Alcalde, Javier Setoain, Jesús I. Mendieta-Moreno, Jesús Mendieta, Paulino Gómez-Puertas
MEPSA: minimum energy pathway analysis for energy landscapes. Bioinform. 31 (23) (2015)
Edgardo Mejía-Roa, Daniel Tabas-Madrid, Javier Setoain, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano
NMF-mGPU: non-negative matrix factorization on multi-GPU systems. BMC Bioinform. 16 (2015)
Christian Tenllado, José Ignacio Gómez, Javier Setoain, Darío Mora, Manuel Prieto
Improving face recognition by combination of natural and Gabor faces. Pattern Recognit. Lett. 31 (11) (2010)
Fermin Ayuso, Javier Setoain, Manuel Prieto, Christian Tenllado, Francisco Tirado, Javier Plaza, Antonio Plaza
Endmember Extraction from Hyperspectral Imagery using a Parallel Ensemble Approach with Consensus Analysis. IGARSS (5) (2009)
Antonio Donaire, Núria Bargalló, Carlos Falcón, Iratxe Maestro, Mar Carreno, Javier Setoain, Jordi Rumià, Santiago Fernández, Luis Pintor, Teresa Boget
Identifying the structures involved in seizure generation using sequential analysis of ictal-fMRI data. NeuroImage 47 (1) (2009)
Javier Setoain, Manuel Prieto, Christian Tenllado, Francisco Tirado
GPU for Parallel On-Board Hyperspectral Image Processing. Int. J. High Perform. Comput. Appl. 22 (4) (2008)
Christian Tenllado, Javier Setoain, Manuel Prieto, Luis Piñuel, Francisco Tirado
Parallel Implementation of the 2D Discrete Wavelet Transform on Graphics Processing Units: Filter Bank versus Lifting. IEEE Trans. Parallel Distributed Syst. 19 (3) (2008)
Javier Setoain, Manuel Prieto, Christian Tenllado, Antonio Plaza, Francisco Tirado
Parallel Morphological Endmember Extraction Using Commodity Graphics Hardware. IEEE Geosci. Remote. Sens. Lett. 4 (3) (2007)
Carlos García, Manuel Prieto, Javier Setoain, Francisco Tirado
Enhancing the Performance of Multigrid Smoothers in Simultaneous Multithreading Architectures. VECPAR (2006)
Javier Setoain, Christian Tenllado, Manuel Prieto, David Valencia, Antonio Plaza, Javier Plaza
Parallel Hyperspectral Image Processing on Commodity Graphics Hardware. ICPP Workshops (2006)