Alberto D. Pascual-Montano

Publication Activity (10 Years)

Years Active: 2001-2015
Publications (10 Years): 0

Top Topics

Negative Matrix Factorization

Functional Genomics

Sparsity Constraints

Top Venues

Nucleic Acids Res.

Publications

Javier Setoain, Mònica Franch, Marta Martínez, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, Annette Bakker, Eduardo Gonzalez-Couto, Juan Elvira, Alberto D. Pascual-Montano
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Edgardo Mejía-Roa, Daniel Tabas-Madrid, Javier Setoain, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano
NMF-mGPU: non-negative matrix factorization on multi-GPU systems. BMC Bioinform. 16 (2015)
Rubén Nogales-Cadenas, Slavica Jonic, Florence Tama, A. A. Arteni, Daniel Tabas-Madrid, Miguel Vázquez, Alberto D. Pascual-Montano, Carlos Oscar Sánchez Sorzano
3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Daniel Tabas-Madrid, Rubén Nogales-Cadenas, Alberto D. Pascual-Montano
GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2 (S-5) (2011)
Christian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez, Alberto D. Pascual-Montano
Finding closed frequent item sets by intersecting transactions. EDBT (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Alberto D. Pascual-Montano
Gene expression modular analysis: an overview from the data mining perspective. WIREs Data Mining Knowl. Discov. 1 (5) (2011)
Edgardo Mejía-Roa, Carlos García, José Ignacio Gómez, Manuel Prieto, Francisco Tirado, Rubén Nogales, Alberto D. Pascual-Montano
Biclustering and classification analysis in gene expression using Nonnegative Matrix Factorization on multi-GPU systems. ISDA (2011)
Edgardo Mejía-Roa, Carlos García, José Ignacio Gómez, Manuel Prieto, Christian Tenllado, Alberto D. Pascual-Montano, Francisco Tirado
Parallelism on the Nonnegative Matrix Factorization. PARCO (2011)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine (2010)
Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano
Moara: a Java library for extracting and normalizing gene and protein mentions. BMC Bioinform. 11 (2010)
Miguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Rubén Nogales-Cadenas, Federico Abascal, Javier Díez-Pérez, José María Carazo, Alberto D. Pascual-Montano
CentrosomeDB: a human centrosomal proteins database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Rubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vázquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano
Extraction of biomedical events using case-based reasoning. BioNLP@HLT-NAACL (Shared Task) (2009)
Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
SENT: semantic features in text. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Miguel Vázquez, Monica Chagoyen, Alberto D. Pascual-Montano
Named Entity Recognition and Normalization: A Domain-Specific Language Approach. IWPACBB (2008)
Edgardo Mejía-Roa, Pedro Carmona-Saez, Rubén Nogales, Cesar Vicente, Miguel Vázquez, X. Y. Yang, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano
bioNMF: a web-based tool for nonnegative matrix factorization in biology. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
Assessment of protein set coherence using functional annotations. BMC Bioinform. 9 (2008)
Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP (2008)
Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinform. 24 (9) (2008)
Alberto D. Pascual-Montano
Non-negative matrix factorization in bioinformatics: Towards understanding biological processes. ISCAS (2008)
Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. BioLINK@ISMB/ECCB (2008)
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7 (2006)
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano
A literature-based similarity metric for biological processes. BMC Bioinform. 7 (2006)
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7 (2006)
Carlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo
Optimization problems in electron microscopy of single particles. Ann. Oper. Res. 148 (1) (2006)
Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7 (2006)
Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinform. 7 (2006)
Alberto D. Pascual-Montano, José María Carazo, Kieko Kochi, Dietrich Lehmann, Roberto D. Pascual-Marqui
Nonsmooth Nonnegative Matrix Factorization (nsNMF). IEEE Trans. Pattern Anal. Mach. Intell. 28 (3) (2006)
Carlos García, Manuel Prieto, Alberto D. Pascual-Montano
A Speculative Parallel Algorithm for Self-Organizing Maps. PARCO (2005)
Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui
Two-way clustering of gene expression profiles by sparse matrix factorization. CSB Workshops (2005)
Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano
Engene: the processing and exploratory analysis of gene expression data. Bioinform. 19 (5) (2003)
Pedro A. de Alarcón, Alberto D. Pascual-Montano, José María Carazo
Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases. CIVR (2002)
Pedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo
Modeling Shape and Topology of 3D Images of Biological Specimens. ICPR (1) (2002)
Roberto D. Pascual-Marqui, Alberto D. Pascual-Montano, Kieko Kochi, José María Carazo
Smoothly distributed fuzzy c-means: a new self-organizing map. Pattern Recognit. 34 (12) (2001)