Pedro Carmona-Saez

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 11

Top Topics

Association Studies

Arbitrarily Shaped

Gene Expression

Top Venues

Briefings Bioinform.

Comput. Biol. Medicine

Publications

Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme
Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'. Briefings Bioinform. 25 (1) (2023)
Jordi Martorell-Marugan, Marco Chierici, Giuseppe Jurman, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
Differential diagnosis of systemic lupus erythematosus and Sjögren's syndrome using machine learning and multi-omics data. Comput. Biol. Medicine 152 (2023)
Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. Nucleic Acids Res. 50 (W1) (2022)
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme
Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression. Briefings Bioinform. 23 (5) (2022)
Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López
DREIMT: a drug repositioning database and prioritization tool for immunomodulation. Bioinform. 37 (4) (2021)
Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
A comprehensive database for integrated analysis of omics data in autoimmune diseases. BMC Bioinform. 22 (1) (2021)
Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Jordi Martorell-Marugan, Yolanda Román Montoya, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
A survey of gene expression meta-analysis: methods and applications. Briefings Bioinform. 22 (2) (2021)
Daniel Toro-Domínguez, Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Víctor González-Rumayor, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
ImaGEO: integrative gene expression meta-analysis from GEO database. Bioinform. 35 (5) (2019)
Jordi Martorell-Marugan, Víctor González-Rumayor, Pedro Carmona-Saez
mCSEA: detecting subtle differentially methylated regions. Bioinform. 35 (18) (2019)
Pedro Carmona-Saez, Nieves Varela, María José Luque, Daniel Toro-Domínguez, Jordi Martorell-Marugan, Marta E. Alarcón-Riquelme, Concepción Marañón
Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models. Bioinform. 33 (23) (2017)
Jordi Martorell-Marugan, Daniel Toro-Domínguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez
MetaGenyo: a web tool for meta-analysis of genetic association studies. BMC Bioinform. 18 (1) (2017)
Christian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez, Alberto D. Pascual-Montano
Finding closed frequent item sets by intersecting transactions. EDBT (2011)
Miguel Vázquez, Rubén Nogales, Pedro Carmona-Saez, Alberto Pascual, Juan Pavón
Rbbt: A Framework for Fast Bioinformatics Development with Ruby. IWPACBB (2010)
Miguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Rubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vázquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
SENT: semantic features in text. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Edgardo Mejía-Roa, Pedro Carmona-Saez, Rubén Nogales, Cesar Vicente, Miguel Vázquez, X. Y. Yang, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano
bioNMF: a web-based tool for nonnegative matrix factorization in biology. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinform. 24 (9) (2008)
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7 (2006)
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano
A literature-based similarity metric for biological processes. BMC Bioinform. 7 (2006)
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7 (2006)
Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7 (2006)
Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinform. 7 (2006)
Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui
Two-way clustering of gene expression profiles by sparse matrix factorization. CSB Workshops (2005)
A. Fazel Famili, Ziying Liu, Pedro Carmona-Saez, Alaka Mullick
Knowledge Discovery in the Identification of Differentially Expressed Genes in Tumoricidal Macrophage. IDA (2005)