Hugo López-Fernández

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 30

Top Topics

Colorectal Cancer

Protein Interaction

Mass Spectrometry

Top Venues

Comput. Methods Programs Biomed.

Publications

Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines. BMC Bioinform. 25 (1) (2024)
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
Auto-phylo: A Pipeline Maker for Phylogenetic Studies. PACBB (2023)
María José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour
PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data. Nucleic Acids Res. 51 (W1) (2023)
André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3. J. Integr. Bioinform. 20 (2) (2023)
Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species. PACBB (2022)
Daniel Pérez-Rodríguez, Mateo Pérez-Rodríguez, Roberto C. Agís-Balboa, Hugo López-Fernández
Towards a Flexible and Portable Workflow for Analyzing miRNA-Seq Neuropsychiatric Data: An Initial Replicability Assessment. PACBB (2022)
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, David Remedios, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña
Real-time polyp detection model using convolutional neural networks. Neural Comput. Appl. 34 (13) (2022)
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
SEDA: A Desktop Tool Suite for FASTA Files Processing. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Daniel Pérez-Rodríguez, Hugo López-Fernández, Roberto C. Agís-Balboa
On the Reproducibility of MiRNA-Seq Differential Expression Analyses in Neuropsychiatric Diseases. PACBB (2021)
Daniel Pérez-Rodríguez, Hugo López-Fernández, Roberto C. Agís-Balboa
Application of miRNA-seq in neuropsychiatry: A methodological perspective. Comput. Biol. Medicine 135 (2021)
Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López
DREIMT: a drug repositioning database and prioritization tool for immunomodulation. Bioinform. 37 (4) (2021)
Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
The pegi3s Bioinformatics Docker Images Project. PACBB (2021)
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Hugo López-Fernández, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Daniel Glez-Peña
Deep Neural Networks approaches for detecting and classifying colorectal polyps. Neurocomputing 423 (2021)
Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña
Compi: a framework for portable and reproducible pipelines. PeerJ Comput. Sci. 7 (2021)
Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen. PACBB (2020)
Alba Nogueira-Rodríguez, Hugo López-Fernández, Osvaldo Graña-Castro, Miguel Reboiro-Jato, Daniel Glez-Peña
Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines. PACBB (2020)
Alba Nogueira-Rodríguez, Hugo López-Fernández, Daniel Glez-Peña
Deep Learning Techniques for Real Time Computer-Aided Diagnosis in Colorectal Cancer. DCAI (Special Sessions) (2019)
Osvaldo Graña-Castro, Hugo López-Fernández, Florentino Fdez-Riverola, Fátima Al-Shahrour, Daniel Glez-Peña
Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine. PACBB (2019)
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
Inferring Positive Selection in Large Viral Datasets. PACBB (2019)
Hugo López-Fernández, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço
DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. Comput. Biol. Medicine 107 (2019)
Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species. PACBB (2018)
Osvaldo Graña, Hugo López-Fernández, Florentino Fdez-Riverola, David G. Pisano, Daniel Glez-Peña
Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. Bioinform. 34 (8) (2018)
Hugo López-Fernández, Jose E. Araújo, Susana Jorge, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo Miguel Santos, Florentino Fdez-Riverola, José L. Capelo
S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data. Comput. Methods Programs Biomed. 155 (2018)
Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees. PACBB (2018)
Fernando Aparicio, Maria de la Luz Morales-Botello, Margarita Rubio, Asunción Hernando, Rafael Muñoz, Hugo López-Fernández, Daniel Glez-Peña, Florentino Fdez-Riverola, Manuel de la Villa, Manuel J. Maña López, Diego Gachet, Manuel de Buenaga Rodríguez
Perceptions of the use of intelligent information access systems in university level active learning activities among teachers of biomedical subjects. Int. J. Medical Informatics 112 (2018)
Hugo López-Fernández, Jose E. Araújo, Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, José Luis Capelo-Martínez
S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data. PACBB (2017)
Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira
Automated Collection and Sharing of Adaptive Amino Acid Changes Data. PACBB (2017)
Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Angel Carro, José María Fernández, Coral Fustero Torre, Florentino Fdez-Riverola, Daniel Glez-Peña
RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data. Comput. Methods Programs Biomed. 138 (2017)
Hugo López-Fernández, Gustavo de S. Pessôa, Marco A. Z. Arruda, José Luis Capelo-Martínez, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data. J. Cheminformatics 8 (1) (2016)
Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Angel Carro, José María Fernández, Florentino Fdez-Riverola, Daniel Glez-Peña, David G. Pisano
RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data. PACBB (2016)
Hugo López-Fernández, Hugo Miguel Santos, José L. Capelo, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery. BMC Bioinform. 16 (2015)
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Florentino Fernández Riverola
A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification. Int. J. Data Min. Bioinform. 10 (4) (2014)
Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola
Web scraping technologies in an API world. Briefings Bioinform. 15 (5) (2014)
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Aparicio, Diego Gachet, Manuel Buenaga, Florentino Fdez-Riverola
BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments. Comput. Methods Programs Biomed. 111 (1) (2013)
Miguel Reboiro-Jato, Rosalía Laza, Hugo López-Fernández, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola
genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data. Expert Syst. Appl. 40 (1) (2013)
Hugo López-Fernández, Miguel Reboiro-Jato, Sara C. Madeira, Rubén López-Cortés, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Peña
A Workflow for the Application of Biclustering to Mass Spectrometry Data. PACBB (2013)
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. PACBB (2012)
Florentino Fdez-Riverola, Daniel Glez-Peña, Hugo López-Fernández, Miguel Reboiro-Jato, José Ramon Méndez
A JAVA application framework for scientific software development. Softw. Pract. Exp. 42 (8) (2012)
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola
Rapid development of proteomic applications with the AIBench framework. J. Integr. Bioinform. 8 (3) (2011)
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)