Oswaldo Trelles

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 13

Top Topics

Computing Resources

Top Venues

Euro-Par Workshops

Publications

Esteban Pérez-Wohlfeil, Oswaldo Trelles, Nicolás Guil
Irregular alignment of arbitrarily long DNA sequences on GPU. J. Supercomput. 79 (8) (2023)
Eugenia Ulzurrun, Yorley Duarte, Esteban Pérez-Wohlfeil, Fernando D. González Nilo, Oswaldo Trelles
PLIDflow: an open-source workflow for the online analysis of protein-ligand docking using galaxy. Bioinform. 36 (14) (2020)
Pablo Rodríguez-Brazzarola, Esteban Pérez-Wohlfeil, Sergio Díaz Del Pino, Ricardo Holthausen, Oswaldo Trelles
Analyzing the Differences Between Reads and Contigs When Performing a Taxonomic Assignment Comparison in Metagenomics. IWBBIO (1) (2018)
Sergio Díaz Del Pino, Juan Falgueras Cano, Esteban Pérez-Wohlfeil, Oswaldo Trelles
mORCA: sailing bioinformatics world with mobile devices. Bioinform. 34 (5) (2018)
Esteban Pérez-Wohlfeil, Oswaldo Trelles
Precise and Parallel Pairwise Metagenomic Comparisons. J. Comput. Biol. 25 (8) (2018)
Ricardo Holthausen, Sergio Díaz Del Pino, Esteban Pérez-Wohlfeil, Pablo Rodríguez-Brazzarola, Oswaldo Trelles
Workflows and Service Discovery: A Mobile Device Approach. IWBBIO (1) (2018)
Michael T. Krieger, Óscar Torreño Tirado, Oswaldo Trelles, Dieter Kranzlmüller
Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows. Future Gener. Comput. Syst. 67 (2017)
Esteban Pérez-Wohlfeil, Óscar Torreño Tirado, Oswaldo Trelles
Pairwise and Incremental Multi-stage Alignment of Metagenomes: A New Proposal. IWBBIO (2) (2017)
Esteban Pérez-Wohlfeil, Óscar Torreño Tirado, Oswaldo Trelles
Accelerating Exhaustive Pairwise Metagenomic Comparisons. ICA3PP (2017)
Óscar Torreño Tirado, Oswaldo Trelles
Two level parallelism and I/O reduction in genome comparisons. Clust. Comput. 20 (3) (2017)
Alex Upton, Johan Karlsson, Oswaldo Trelles, Miguel Hernandez, Juan Elvira
A Framework for Accessible Cluster-Enabled Epistatic Analysis. Euro-Par Workshops (2016)
Óscar Torreño Tirado, Oswaldo Trelles
Two-Level Parallelism to Accelerate Multiple Genome Comparisons. Euro-Par Workshops (2016)
Alex Upton, Oswaldo Trelles, José Antonio Cornejo-García, James Richard Perkins
Review: High-performance computing to detect epistasis in genome scale data sets. Briefings Bioinform. 17 (3) (2016)
Óscar Torreño Tirado, Oswaldo Trelles
Breaking the computational barriers of pairwise genome comparison. BMC Bioinform. 16 (2015)
Sergio Díaz Del Pino, Tor Johan Mikael Karlsson, Juan Falgueras Cano, Oswaldo Trelles
Mobile Access to On-line Analytic Bioinformatics Tools. IWBBIO (2) (2015)
Alex Upton, Oswaldo Trelles, James Richard Perkins
Epistatic Analysis of Clarkson Disease. ICCS (2015)
Óscar Torreño Tirado, Michael T. Krieger, Paul Heinzlreiter, Oswaldo Trelles
Pairwise Genome Comparison Workflow in the Cloud Using Galaxy. ICCS (2015)
Jose A. Arjona-Medina, Oswaldo Trelles
Computational Synteny Block: A framework to identify evolutionary events. BIBM (2015)
Paul Heinzlreiter, James Richard Perkins, Óscar Torreño Tirado, Tor Johan Mikael Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers. CLOSER (2014)
Tor Johan Mikael Karlsson, Oswaldo Trelles
MAPI: a software framework for distributed biomedical applications. J. Biomed. Semant. 4 (2013)
Tor Johan Mikael Karlsson, Óscar Torreño Tirado, Daniel Ramet Barea, Juan Lago, Juan Falgueras Cano, Noura Chelbat, Oswaldo Trelles
Bio-Cirrus: A Framework for Running Legacy Bioinformatics Applications with Cloud Computing Resources. IWANN (2) (2013)
Tor Johan Mikael Karlsson, Óscar Torreño Tirado, Daniel Ramet Barea, Günter Klambauer, Miriam Cano Castillo, Oswaldo Trelles
Enabling Large-Scale Bioinformatics Data Analysis with Cloud Computing. ISPA (2012)
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2 (2011)
Andrés Rodríguez Moreno, Oswaldo Trelles, Manuel Ujaldon
Using Graphics Processors for a High Performance Normalization of Gene Expressions. HPCC (2011)
Sergio Ramírez, Tor Johan Mikael Karlsson, Oswaldo Trelles
MAPI: towards the integrated exploitation of bioinformatics Web Services. BMC Bioinform. 12 (2011)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
Victoria Martin-Requena, Javier Ríos, Maximiliano García, Sergio Ramírez, Oswaldo Trelles
jORCA: easily integrating bioinformatics Web Services. Bioinform. 26 (4) (2010)
Maximiliano García, Tor Johan Mikael Karlsson, Oswaldo Trelles
Web service catalogue for Biomedical Grid infrastructure. HealthGrid (2010)
Tor Johan Mikael Karlsson, Victoria Martin-Requena, Javier Ríos, Oswaldo Trelles
Workflow Composition and Enactment Using jORCA. ISoLA (1) (2010)
Tor Johan Mikael Karlsson, Oswaldo Trelles
jORCA and Magallanes Sailing Together towards Integration of Web Services. JBI (2010)
Antonio Muñoz-Merida, Javier Ríos, Hicham Benzekri, Oswaldo Trelles
Statistical Significance for NGS Reads Similarities. JBI (2010)
Sergio Ramírez, Antonio Muñoz-Merida, Tor Johan Mikael Karlsson, Maximiliano García, Antonio J. Pérez-Pulido, M. Gonzalo Claros, Oswaldo Trelles
MOWServ: a web client for integration of bioinformatic resources. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Victoria Martin-Requena, Antonio Muñoz-Merida, M. Gonzalo Claros, Oswaldo Trelles
PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data. BMC Bioinform. 10 (2009)
Javier Ríos, Tor Johan Mikael Karlsson, Oswaldo Trelles
Magallanes: a web services discovery and automatic workflow composition tool. BMC Bioinform. 10 (2009)
Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons. BMC Bioinform. 9 (2008)
Manolis Tsiknakis, Stelios Sfakianakis, Stefan Rüping, Oswaldo Trelles, Thierry Siestang, Brecht Claerhout, Vassilis Virvilis
A Semantic Grid Services Architecture in Support of Efficient Knowledge Discovery from Multilevel Clinical and Genomic Datasets. HEALTHINF (1) (2008)
Sergio Ramírez, Hugo Rosales, Oswaldo Trelles
On-line Distance Learning Platform. WEBIST (3) (2007)
Ismael Navas Delgado, Maria del Mar Rojano-Muñoz, Sergio Ramírez, Antonio J. Pérez-Pulido, Eduardo Andrés León, José Francisco Aldana Montes, Oswaldo Trelles
Intelligent client for integrating bioinformatics services. Bioinform. 22 (1) (2006)
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7 (2006)
José Francisco Aldana Montes, M. Roldán-Castro, Ismael Navas Delgado, María del Mar Roldán García, Manuel Hidalgo-Conde, Oswaldo Trelles
Bio-Broker: a tool for integration of biological data sources and data analysis tools. Softw. Pract. Exp. 36 (14) (2006)
Ismael Navas Delgado, José Francisco Aldana Montes, Oswaldo Trelles
Distributed Execution of Workflows. International Conference on Computational Science (3) (2006)
Ismael Navas Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana Montes, Oswaldo Trelles
Distributed Execution of Workflows in the INB. DILS (2006)
José Francisco Aldana Montes, Manuel Hidalgo-Conde, Ismael Navas Delgado, María del Mar Roldán García, Oswaldo Trelles
Bio-Broker: a biological data and services mediator system. IADIS AC (2005)
Manuel Hidalgo-Conde, Andrés Rodríguez Moreno, Sergio Ramírez, Oswaldo Trelles
Adaptive Task Scheduling in Computational GRID Environments. EGC (2005)
Andrés Rodríguez Moreno, Nicolás Guil, David M. Shotton, Oswaldo Trelles
Analysis and Description of the Semantic Content of Cell Biological Videos. Multim. Tools Appl. 25 (1) (2005)
Luis F. Romero, Oswaldo Trelles, M. A. Trelles
Real-Time Simulation for Laser-Tissue Interaction Model. PARCO (2005)
Sergio Ramírez, E. de Andrés, Ismael Navas Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana Montes, Oswaldo Trelles
Services Integration and Task-scheduling in Bioinformatics Grids. PARCO (2005)
José Francisco Aldana Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán García, Pedro A. de Alarcón, Oswaldo Trelles
An Open Architecture for the Dynamic Integration of Biological Data Sources. CCCT (1) (2004)
Andrés Rodríguez Moreno, Nicolás Guil, David M. Shotton, Oswaldo Trelles
Automatic analysis of the content of cell biological videos and database organization of their metadata descriptors. IEEE Trans. Multim. 6 (1) (2004)
Antonio J. Pérez-Pulido, Guillermo Thode, Oswaldo Trelles
AnaGram: protein function assignment. Bioinform. 20 (2) (2004)
Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano
Engene: the processing and exploratory analysis of gene expression data. Bioinform. 19 (5) (2003)
Jorge García de la Nava, Sacha A. F. T. van Hijum, Oswaldo Trelles
PreP: gene expression data pre-processing. Bioinform. 19 (17) (2003)
Olga M. Perez, Manuel Hidalgo-Conde, Francisco Javier Marín Martín, Oswaldo Trelles
Weighting and Feature Selection on Gene-Expression Data by the Use of Genetic Algorithms. IWANN (2) (2003)
Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). Softw. Pract. Exp. 32 (9) (2002)
Oswaldo Trelles
On the Parallelisation of Bioinformatics Applications. Briefings Bioinform. 2 (2) (2001)
Olga M. Perez, Francisco Javier Marín Martín, Oswaldo Trelles
Improving Biological Sequence Property Distances by Using a Genetic Algorithm. IWANN (2) (2001)
Andrés Rodríguez Moreno, David M. Shotton, Oswaldo Trelles, Nicolás Guil
Automatic Feature extraction in Wound Healing Videos. RIAO (2000)
David M. Shotton, Andrés Rodríguez Moreno, Nicolás Guil, Oswaldo Trelles
Object Tracking and Event Recognition in Biological Microscopy Videos. ICPR (2000)
Andrés Rodríguez Moreno, David M. Shotton, Nicolás Guil, Oswaldo Trelles
Automatic Tracking of Moving Bacterial Cells in Scientific Videos. RIAO (2000)
Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo
Computational space reduction and parallelization of a new clustering approach for large groups of sequences. Bioinform. 14 (5) (1998)
Andrés Rodríguez Moreno, Luis Gerardo de la Fraga, Emilio L. Zapata, José María Carazo, Oswaldo Trelles
Biological sequence analysis on distributed-shared memory multiprocessors. PDP (1998)
Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo
New phylogenetic venues opened by a novel implementation of the DNAml algorithm. Bioinform. 14 (6) (1998)
C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles
Parallel Implementation of DNAml Program on Message-Passing Architectures. Parallel Comput. 24 (5-6) (1998)