Monica Chagoyen

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 10

Top Topics

Chemical Compounds

Gene Expression

Post Transcriptional

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen, Juan Antonio Garcia-Ranea, Florencio Pazos
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature. Database J. Biol. Databases Curation 2024 (2024)
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis. Nucleic Acids Res. 51 (W1) (2023)
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
Predicting biological pathways of chemical compounds with a profile-inspired approach. BMC Bioinform. 22 (1) (2021)
Monica Chagoyen, Juan F. Poyatos
Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program. PLoS Comput. Biol. 15 (9) (2019)
Florencio Pazos, Monica Chagoyen
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology. Briefings Bioinform. 20 (4) (2019)
Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms. Bioinform. 35 (18) (2019)
Sara González-Pérez, Florencio Pazos, Monica Chagoyen
Factors affecting interactome-based prediction of human genes associated with clinical signs. BMC Bioinform. 18 (1) (2017)
Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen
MBROLE 2.0 - functional enrichment of chemical compounds. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Monica Chagoyen, Florencio Pazos
Characterization of clinical signs in the human interactome. Bioinform. 32 (12) (2016)
Monica Chagoyen, Juan A. García-Martín, Florencio Pazos
Practical analysis of specificity-determining residues in protein families. Briefings Bioinform. 17 (2) (2016)
Monica Chagoyen, Florencio Pazos
Tools for the functional interpretation of metabolomic experiments. Briefings Bioinform. 14 (6) (2013)
Monica Chagoyen, Florencio Pazos
MBRole: enrichment analysis of metabolomic data. Bioinform. 27 (5) (2011)
Monica Chagoyen, Florencio Pazos
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data. Bioinform. 26 (3) (2010)
Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
SENT: semantic features in text. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Miguel Vázquez, Monica Chagoyen, Alberto D. Pascual-Montano
Named Entity Recognition and Normalization: A Domain-Specific Language Approach. IWPACBB (2008)
Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
Assessment of protein set coherence using functional annotations. BMC Bioinform. 9 (2008)
Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP (2008)
Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7 (2006)
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano
A literature-based similarity metric for biological processes. BMC Bioinform. 7 (2006)
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7 (2006)
Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7 (2006)
Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta
Designing and executing scientific workflows with a programmable integrator. Bioinform. 20 (13) (2004)
Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta
A Semantic Mediation Approach for Problems in Computational Molecular Biology. CSB (2003)
José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, Susana G. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier
Organising multi-dimensional biological image information: the BioImage Database. Nucleic Acids Res. 27 (1) (1999)